1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgttggctctgtcagatctgttttgtcacagttatagtccccaaatcctcaagagccctcttgaaaattttaacaaatagatttaggcatttcattctgagttttaacaagttttgttaacttgcatcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTCGCGAACTGCCTCAGAGATGGCTGATGTACTCTATCATACCATGGTCCTG
species | Vitis vinifera |
transcript | Vv14s0068g00910.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCG GGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTCEST: gi|351017321|gb|FQ435673.1|FQ435673
genomic: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCGgtaatgttgg ... tcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTC
EST: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCG GGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTCEST: gi|110372593|gb|EC936774.1|EC936774
genomic: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCGgtaatgttgg ... tcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTC
EST: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCG GGAAGAGGCAGATGAGTTGTGTCGAACGCACGAGGAAAATGAGGATAAGTCEST: gi|351015089|gb|FQ444378.1|FQ444378
genomic: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCGgtaatgttgg ... tcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTC
EST: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGCGCTCAAAAATTCG GGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTC
genomic: TGGACAAAACGACTGCTACTTGATGACAAGTTGCTGTGCTCAAAAATTCGgtaatgttgg ... tcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTC
tttaggcatttcattctgagttttaacaagttttgttaacttgcatcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTCGCGAACTGCCTCAGAGATGGCTGATGTACTCTATCATACCATGGTCCTG
tgttaac putative branch site (score: 2)
ttttaacaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttggctctgtcagatctgttttgtcacagttatagtccccaaatcctcaagagccctcttgaaaattttaacaaatagatttaggcatttcattctgagttttaacaagttttgttaacttgcatcatttacagGGAAGAGGCAGATGAGTTGTGTCGAACGCATGAGGAAAATGAGGATAAGTCGCGAACTGCCTCAGAGATGGCTGATGTACTCTATCATACCATGGTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT