1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccccttaattctttttaaaatttctaatgttctgatagcaacagccccctcatgtgtgtttgtttcctagctgattctcttgtttgctttcccaatccagGATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTATTGGAAAAGCTCTCTCTTTCCGAAAAGAACTATGGTTCTGTCAGGAGGT
species | Vitis vinifera |
transcript | Vv14s0068g00390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGACAAATCATTGTTGAAGGACTTGTTATTCAACCAGAGTCCTACCAAG GATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTAEST: gi|110688498|gb|EE067122.1|EE067122
genomic: TTGACAAATCATTGTTGAAGGACTTGTTATTCAACCAGAGTCCTACCAAGgtatgtttta ... cccaatccagGATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTA
EST: TTGACAAATCATTGTTGAAGGACTTGTTATTCAACCAGAGTCCTACCAAG GATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTA
genomic: TTGACAAATCATTGTTGAAGGACTTGTTATTCAACCAGAGTCCTACCAAGgtatgtttta ... cccaatccagGATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTA
cccctcatgtgtgtttgtttcctagctgattctcttgtttgctttcccaatccagGATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTATTGGAAAAGCTCTCTCTTTCCGAAAAGAACTATGGTTCTGTCAGGAGGT
agctgat putative branch site (score: 4)
ttctcttgtttgcttt CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccttaattctttttaaaatttctaatgttctgatagcaacagccccctcatgtgtgtttgtttcctagctgattctcttgtttgctttcccaatccagGATGTTGCATTAGCATCTGTTTCAATGAGACCAATGCCCTTTATGCCAGTATTGGAAAAGCTCTCTCTTTCCGAAAAGAACTATGGTTCTGTCAGGAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-cccttaa
- - - - - - - - - - - - - - - - - - agcaaca
- - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctagc