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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttctttaacacaatgagattatttttataatcatacatatgaaaattctcatctctttctccttccttggcctgtatattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAGATTTACTACAATAGGCCTGATGTGCAGAAAGCACTGCATGCCAATACTA

Basic information

species Vitis vinifera
transcript Vv14s0068g00260.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G50170.1 (Glycine max), 3'ss of exon 4
gtatttttttctttaacacaatgagattatttttataatcatacatatgaaa----attctcatctctttctccttccttgg--cctgtatattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAGATTTACTACAATAGGCCTGATGTGCAGAAAGCACTGCATGCCAATACTA-
  ||| ||  | ||||           |  | || |    | | |||||| |    | |||  |   | |   |||          | | |||||||||  ||| || ||    ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |  | 
aaattgttgacattaaagtttctcatatgatattgttgctacatatatgagacaataatcttgttgatatgagcttatggaaaatttatttattctcaggATTTTAGTCATTGGTCTGGTTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCATGCCAACAAAAC

upper sequence: Vv14s0068g00260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G26930.1 (Glycine max), 3'ss of exon 4
--gtatt--tttttctttaacacaatgagattatttttataatcat-acatatgaaaattctcatctctttctccttccttg--gcctgtatattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAGATTTACTACAATAGGCCTGATGTGCAGAAAGCACTGCATGCCAATACTA
   ||||    ||   ||      |||| ||| ||  |||    || ||| || |   |  | ||   | |   |||          | | |||  ||||  ||| |||||    ||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || |  |
gaatattgacattaaatttttctcatgatatttttgctatgtatatgacagataatcttgttaattcatatgagcttatggaaaatttatttatgttcagGCTTTTAGGCATTGGTCTGGTTATGATCCATGTACGGAAAAGTATGCCGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCATGCTAACAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30255072|gb|CB971519.1|CB971519
EST:     GCAGTGGCGCCACCCGCCAGACTATTCGGTTGCCTCATCGATCTCATAGG                         ATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
genomic: GCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtattttttt ... atattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
EST: gi|110686749|gb|EE064741.1|EE064741
EST:     GCAGTGGCGCCACCCGCCAGACTATTCGGTTGCCTCATCGATCTCATAGG                         ATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG
genomic: GCAGTGGCGCCACCCGCCAGACTATTCGCTTGCCTCATCGATCTCATAGGgtattttttt ... atattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatacatatgaaaattctcatctctttctccttccttggcctgtatattctcagATTTTCAGGCAGATATCTGGCTATGATCCATGTACTGAAAAATATGCTGAGATTTACTACAATAGGCCTGATGTGCAGAAAGCACTGCATGCCAATACTA
                                              tattctc  CT-rich tract
      atatgaaaatt  TA-rich tract