1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactatttcttccctatgataggataaaatctgctgagcctttttcatctttttcatctttcttggttaatattctgagaatgtgttgtgattgtcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACATATGTGTGAGAGCATGCATGACATGCTGTGACCGCTGCAAATGTGTTCC
species | Vitis vinifera |
transcript | Vv14s0066g01790.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|33403022|gb|CF208649.1|CF208649
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCCCTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|33402934|gb|CF208561.1|CF208561
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|110688487|gb|EE067095.1|EE067095
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGACAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|77580932|gb|DV219395.1|DV219395
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAAAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|110710595|gb|EE087096.1|EE087096
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGACAAGATTGG ACTGCGTCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|110377941|gb|EC943044.1|EC943044
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|71868020|gb|DT017075.1|DT017075
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACAEST: gi|110686807|gb|EE064863.1|EE064863
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
EST: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGG ACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
genomic: AGTCACGCCTCCTACTACAGCACCAATGCCCCCAGTGAGGGCAAGATTGGgtactatttc ... tcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACA
tttttcatctttcttggttaatattctgagaatgtgttgtgattgtcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACATATGTGTGAGAGCATGCATGACATGCTGTGACCGCTGCAAATGTGTTCC
ggttaat putative branch site (score: 4)
ttaatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatttcttccctatgataggataaaatctgctgagcctttttcatctttttcatctttcttggttaatattctgagaatgtgttgtgattgtcgtctgcagACTGCATCCCACTATGTGATCAGAGGTGTAAAGCACATTCAAGGAAGAACATATGTGTGAGAGCATGCATGACATGCTGTGACCGCTGCAAATGTGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG