Sequence
atgc intronic sequence ATGC exonic sequencegtcttgccatttaagatcaatttcttacttgaaatagaatttaatttaatatagaagaatgagattataagaattatgaatgcttgtagATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G01480.1 (Glycine max), 3'ss of exon 3
---------gtcttgccattt---aagatcaatttcttacttgaaatagaatttaatttaatatagaagaatgagattataagaattatgaatgcttgtagATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
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ttactccatgttctgataatcgtgaagattatttttttaagagataatcaagatgatatt-tatcttttcgtggaactgtcatacatgcatatatatacagATTGAACTCATCGCACCAAGAGAAGTTGCAAGCCAATGCCCTCTCAAATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCA
upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G01470.1 (Glycine max), 3'ss of exon 3
----gtcttgccatttaagatcaatttcttacttgaa---atagaatttaatttaatatagaagaatgagattataagaatt--atgaatgcttgt--agATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
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aatacacataaaaattatgcctttttatttacttaatcttgtgataattaatcaagaagatatttaacatgtcgtggaattttcatacatgtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGGCAATGCCCTCTCAAATCTTTCAAATTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATTA
upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G04410.1 (Glycine max), 3'ss of exon 3
----------gtcttgccatttaagatcaatttcttac-ttgaaatagaatttaatttaatatagaagaatgagattataaga--attatgaatgcttgt--agATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
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tgcacataaaatcatgccttttta--tttactcaacacgttgtgataaactgataatcaaga--agatatttaacttgtggaattgtcgtgcatgtttatatagATTGAACTCATCGCACCAAGAGAAGTTGCAAGCCAATGCCCACTAAGATCTTTCAAGTTCTACAAGACAAAGGAAATTCCCACTGGCTTCTTTGAGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagaatttaatttaatatagaagaatgagattataagaattatgaatgcttgtagATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
atttaat putative branch site (score: 4)
tttaatttaatataga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttgccatttaagatcaatttcttacttgaaatagaatttaatttaatatagaagaatgagattataagaattatgaatgcttgtagATTGAGCTGACAGCACCTAGAGAAGTTGCAAGCCAGTGCCCCCTCAAATCTTTCAAGTTCTACAAGACAAAAGAGGTTCCGACCGGCTTTTATGATATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG