1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actactgcctccatcatgcttagttgataatttcatattgtatacaatgctaagttgatagttttctttcgataaaactcagatttactttttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTTTATTGATCCAAGTACAGAAAAGCCCCGGACAGTACCACTTGAAATCAT
species | Vitis vinifera |
transcript | Vv14s0066g01410.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTAGATTTGGTGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAG CTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTEST: gi|110363828|gb|EC927448.1|EC927448
genomic: TTTAGATTTGGTGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAGgtaagatatc ... tttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCT
EST: GATGGCATGGAAATCCAAAGAG CTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTEST: gi|71871956|gb|DT021011.1|DT021011
genomic: GATGGCATGGAAATCCAAAGAGgtaagatatc ... tttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCT
EST: TTTAGATTTGGTGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAG CTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTEST: gi|30321055|gb|CD004317.1|CD004317
genomic: TTTAGATTTGGTGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAGgtaagatatc ... tttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCT
EST: TGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAG CTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCT
genomic: TGGAGAGGCACTTTTATGATGGCATGGAAATCCAAAGAGgtaagatatc ... tttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCT
aatgctaagttgatagttttctttcgataaaactcagatttactttttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTTTATTGATCCAAGTACAGAAAAGCCCCGGACAGTACCACTTGAAATCAT
agttgat putative branch site (score: 5)
tttacttttt putative PPT
atttactttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actactgcctccatcatgcttagttgataatttcatattgtatacaatgctaagttgatagttttctttcgataaaactcagatttactttttgttgcagCTGATGGATTTGTTGTTCAAACTGGAGATCCTGAGGGTCCTGCAGAGGGCTTTATTGATCCAAGTACAGAAAAGCCCCGGACAGTACCACTTGAAATCAT
- - - gcctcca
- - - - - - -tcatgct
- - - - - - - - - - - - - - - - - - - - - - caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa