Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC

Basic information

species Vitis vinifera
transcript Vv14s0066g01320.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g29220.1 (Oryza sativa), 3'ss of exon 5
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
  |||  || |  |   ||  ||      ||    ||  |||||| ||    |     |||      | ||||||   |   | ||||  |  |       || ||||| ||  |||| || || ||||  || |||||||| || ||||| || |||||||| |||||||| || || ||||||||||||||    ||||| || ||
-aaattattgaagaaaattttgtcagaaagaaa-aagagtgttgtgcacctatgtaaattagctgtctctgaaagaacaaaccctcatccttgt------gttgtcagGATATGGTGGTGACGTCTGGTTCCCCCAGCCAGCACCAAAGGATCACCCATGGCGATACATGCCCAATCATGCTATGACCCCTCACTGCTCTGGGACTAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g29180.1 (Oryza sativa), 3'ss of exon 4
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgt-tcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
    |||   |         |  || |  || |     |||  || | ||| ||||| | |       | |       |        |  | | | |||   || ||||| ||  |||| ||||| ||||  || || ||||| || ||||| || |||||||| |||||||| || || || |||||||||||||| ||||| || ||
---gtgtcctattgaaaaaaaaattataagaatg----atgccgtattaatatttctatcttgatcaatatttcctttagcatgaaaacctcattcttcc--ttctcagGATATGGTGGTGATGTCTGGTTCCCCCAACCAGCACCAAAGGATCACCCATGGCGATACATGCCTAATCATGCCATGACCCCTCATATCTCTGGGACTAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G049811_T01 (Zea mays), 3'ss of exon 4
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgtt-caatgtttct-ttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
      |  |  || |||    | |   | ||  |   ||  ||   | || || ||   ||   | ||  |    |  |       ||| | |  || |   ||  |||| ||| |||| ||||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || ||
-----ctgcctacatttt---atctgaagaatagggaaataatgcgactatattcctacattgaccggtactttgtgtaacatggagcatctca--ttcccatttcccagGATACGGTGGTGATGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTGGGACTAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G147714_T01 (Zea mays), 3'ss of exon 5
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgtt-caatgtttct-ttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
      |  |  || |||    | |   | ||  |   ||  ||   | || || ||   ||   | ||  |    |  |       ||| | |  || |   || ||||| ||  |||| ||||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||||| || ||
-----ctgcctacatttt---atctgaagaatagggaaataatgcgactatattcctacattgaccggtactttgtgtaacatggagcatctca--ttcccatttctcagGATATGGTGGTGATGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTGGGACTAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G418005_T01 (Zea mays), 3'ss of exon 3
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgtt-caatgtttct-ttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
      |  |  || |||    | |   | ||  |   ||  ||   | || || ||   ||   | ||  |    |  |       ||| | |  || |   || ||||| ||  |||| ||||| ||||  ||||||||||| || ||||| || || ||||| |||||||| ||||| || ||||||||||| || ||| | || ||
-----ctgcctacatttt---atctgaagaatagggaaataatgcgactatattcctacattgaccggtactttgtgtaacatggagcatctca--ttcccatttctcagGATATGGTGGTGATGTGTGGTTCCCACAGCCAGCACCAAAGGATCACCCCTGGCGCTACATGCCTAACCATGCCATGACCCCTCACATCTCTAGGACTAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G170602_T01 (Zea mays), 3'ss of exon 4
---------------------------------------------------------------gtaatgtttcagcacttttgagtt-----tcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatg-acttca---ttttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
                                                               |        ||| |  ||  ||       || || |   ||  | || |    || |             | |    |  |  ||     |||   | ||   |   ||||  ||||| ||| | || ||||| ||| | || ||||| || ||||||||||| || ||||| |||||||| ||| | || ||||||||||| || || ||||||||
gtatgtactggctgctgctgtgtcctcctcattttcagcgggttagcatctgttagcaccatggcgccaaaacagaagcttgaagaggcgggtcgtgcagaggaagaagtggcgagatatagaaaaacgccatgctcgccagactcatacgtctcaaactgttgtatgcgtgatgatcagGATACGGCGGCGATGTGTGGCACCCTCAGCCTGCGCCCAAGGACCACCCGTGGCGCTACATGCCCAACAACGCCATGACCCCTCACATCTCCGGCACCAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G23790.4 (Glycine max), 3'ss of exon 4
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttcttttta---tgcagttttgaaagccaatgacttcattttaattttctgattttc--agGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
    |   | ||  || ||  | | ||| | |        |||||| | | || |||||||   |||| ||   ||         | || ||   | | ||| ||||    |||||| ||||| ||||||||||  ||||||||||| || ||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
----tccctaagttctgttatgatcctttgtt--------gttgtt-actattcctttttaagttgcaattactaattttgccatcctctttcctaatctcttatttctatagGTTATAGTGGTGATGTTTGGTTCCCACAGCCAGCTCCAAAGGATCATCCATGGCGTTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G01210.4 (Glycine max), 3'ss of exon 4
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttcttttta---tgcagttttgaaagccaatga-cttcattttaattttctgattttc--agGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
              || ||  | | |||   |||  || ||||||| | | || |||||||   |||| ||   ||      | | | || ||  || | ||| ||||    |||||| ||||| ||||||||||  ||||| ||||| || ||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||| |||||
------------ttctgttatgatcctttttttttggt-tgttgtt-actattcctttttaagttgcaattgctaatttttttcatcctctttccaaatctcttatttctatagGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G01200.1 (Glycine max), 3'ss of exon 4
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttct--gattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
     ||||   ||  ||    | |      ||      ||     ||| ||||    | || || |  | |  |        | | ||  || |||||   || |  ||| ||  |||| |||||||||     ||| ||||| || ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
-----gtttgttcatattcccatctaagttgttcagaggtgg----caaagttttacatcat-cattgctaattgttttcttttcctttccaaatttcttaaatctatagGCTATGGTGGTGATGTTTGGCCCATACAACCAGCTCCAAAGGACCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGCACCAC

upper sequence: Vv14s0066g01320.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S106_16V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgatttt-cagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
                                          ||       |   | |  |  | ||  |      ||  |||     ||||    |   |    | | ||       | ||  ||      |  |   |  | ||  |||| ||  | || ||||| ||| |  | ||||| ||    ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| || ||||| ||
gtaactcgacaacttccgaaaacttccgctcatcccctgcatgtcgctaacctagaatcctaggcttgcttaccaggaacatgaacaccaat--cacgaatggctctggttgctggatcgatcgctaagccgtggtaaccgaaattggcagGATATGGAGGAGATGTATGGAACGCTCAGCCGGCAGGAAAGGACCATCCTTGGCGTTACATGCCGAACCACGCCATGACCCCCCATATCTCCGGCACGAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763995|gb|FQ467565.1|FQ467565
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAG
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|33409026|gb|CF214653.1|CF214653
EST:     CATGGATACGCAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCC
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCC
EST: gi|161715982|gb|FC065526.1|FC065526
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|30130146|gb|CB915485.1|CB915485
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|28961860|gb|CB340934.1|CB340934
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGTAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|22012396|gb|BQ797430.1|BQ797430
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|22009020|gb|BQ794054.1|BQ794054
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110708144|gb|EE085353.1|EE085353
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGAGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCA
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGG-GGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCA
EST: gi|352789699|gb|FQ476297.1|FQ476297
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352764468|gb|FQ472825.1|FQ472825
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|34320409|gb|CF373163.1|CF373163
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110381028|gb|EC946337.1|EC946337
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|28963772|gb|CB342805.1|CB342805
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352794929|gb|FQ477039.1|FQ477039
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|22013923|gb|BQ798957.1|BQ798957
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352763854|gb|FQ465304.1|FQ465304
EST:     GGGCATATTGCAG                         GCTACAGTGGGGATGTTTGGTATCCACAGGCAGCCCCCAAGGACCATCCAT
genomic: GGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110724839|gb|EE101020.1|EE101020
EST:     TGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: TGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|46918254|gb|CN547583.1|CN547583
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|22012397|gb|BQ797431.1|BQ797431
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110412411|gb|EC978159.1|EC978159
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110406155|gb|EC971718.1|EC971718
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110407190|gb|EC972787.1|EC972787
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352764651|gb|FQ469726.1|FQ469726
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGTCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110716652|gb|EE091831.1|EE091831
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110715960|gb|EE090523.1|EE090523
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352777462|gb|FQ474096.1|FQ474096
EST:     GCCGATGCAGGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAG
genomic: GCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|34361893|gb|CF403478.1|CF403478
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110728292|gb|EE103735.1|EE103735
EST:     TGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: TGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|352782551|gb|FQ476631.1|FQ476631
EST:     CAGGGATACATAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|33409105|gb|CF214732.1|CF214732
EST:     CATGGATACGCAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAG
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|45771134|gb|CN006986.1|CN006986
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|34543645|gb|CF511877.1|CF511877
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110732811|gb|EE108422.1|EE108422
EST:     CATGGATACACAAGCTGTTGCCGATTCATGCTCCAGTGGGCATATTGCAA                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGGACCATCCA
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGG-ACCATCCA
EST: gi|352782128|gb|FQ470030.1|FQ470030
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|22009993|gb|BQ795027.1|BQ795027
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110685824|gb|EE062884.1|EE062884
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|32246066|gb|CD711885.1|CD711885
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
EST: gi|110381266|gb|EC946589.1|EC946589
EST:     CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAG                         GTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT
genomic: CATGGATACACAAGCTGTTGCCGATGCATGCTCCAGTGGGCATATTGCAGgtaatgtttc ... tgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC
                                          ttctgat  putative branch site (score: 3)
                                        ttttct  CT-rich tract
                              ttcattttaattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgtttcagcacttttgagtttcttggatttgagtatgttgttcaatgtttctttttatgcagttttgaaagccaatgacttcattttaattttctgattttcagGTTACAGTGGGGATGTTTGGTATCCACAGCCAGCCCCCAAGGACCATCCATGGCGGTACATGCCAAACCAAGCTATGACCCCTCATATTTCTGGCACCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT