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gtgatagtttaaattcaaattacaaaccatctatttagaagctgatgttttggtagcatttctaataattctggcatttctttattctgaaatattattactttttggcttcaattatatttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGGATAAGAGATATAAGAACCGTGAGTTGCAAACAATGCGTCTTCTTGACC
species | Vitis vinifera |
transcript | Vv14s0066g01050.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAG GCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGEST: gi|77580371|gb|DV219072.1|DV219072
genomic: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAGgtgatagttt ... ttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAG
EST: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAG GCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGEST: gi|71870999|gb|DT020054.1|DT020054
genomic: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAGgtgatagttt ... ttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAG
EST: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAG GCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAG
genomic: ACATGGCAGAGCGTGTTGTTGGACAGGGTTCATTTGGAATTGTATTTCAGgtgatagttt ... ttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAG
atttctttattctgaaatattattactttttggcttcaattatatttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGGATAAGAGATATAAGAACCGTGAGTTGCAAACAATGCGTCTTCTTGACC
tatttcttt CT-rich tract
tttattctgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatagtttaaattcaaattacaaaccatctatttagaagctgatgttttggtagcatttctaataattctggcatttctttattctgaaatattattactttttggcttcaattatatttctttacagGCTAAGTGCCTAGAAACTGGAGAAACCGTTGCAATCAAGAAGGTTTTACAGGATAAGAGATATAAGAACCGTGAGTTGCAAACAATGCGTCTTCTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC