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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcctctctctctctctctctctctctctcttgcctcattgtcgtcgtcgtcgtcttcctcctcctcccttctctctcctcgctattaaaatgtgtttttgcagTTCTCAGAAAGCTTTACCATTCTGCTATTTCATTATGATGGTCGGGTGAGCGAATGGGATGAGTTTGAATGGTCGAAACGGGCTATCCATGTGAGCGTTC

Basic information

species Vitis vinifera
transcript Vv14s0066g00310.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00310.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G27470.1 (Arabidopsis thaliana), 3'ss of exon 6
gtctgtcctctctctctctctctctctctctctcttgcctcattgtcgtcgtcgtcgtcttcctcctcctcccttctctctcctcgctattaaaatgtgt-ttttgcagTTCTCAGAAAGCTTTACCATTCTGCTATTTCATTATGATGGTCGGGTGAGCGAATGGGATGAGTTTGAATGGTCGAAACGGGCTATCCATGTGAGCGTTC
                              | || |||||      |        | | ||| || || | ||||| || | |||  |  |  | | |   |||  ||||||||||| | |||  | ||  |||| ||||| || ||||| ||||  ||||||||||| |||||||||||||| || || || || ||||||||| |||
-----------------------------gtatcctgccttgcctcccata----catattcttcttctttccttc-cttttctcattccttgactttacatttctcagTTCTCAGATAACTTCTCTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgtcttcctcctcctcccttctctctcctcgctattaaaatgtgtttttgcagTTCTCAGAAAGCTTTACCATTCTGCTATTTCATTATGATGGTCGGGTGAGCGAATGGGATGAGTTTGAATGGTCGAAACGGGCTATCCATGTGAGCGTTC
                                            tgttttt  CT-rich tract
                                  tattaaaatgtgtttt  TA-rich tract