1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgtcaacttgaaatgtcttctattgcaatgagtttctaatgctgttatttaggatctcctcatttcttgttcatgcagctaatgctacttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCGGCCTTCTCCATCCATTCGAAACCAACTTGAGGTTGCTGCTAGTCTAAA
species | Vitis vinifera |
transcript | Vv14s0066g00210.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTGCTGCCTTCTGCACCTGCTCCTGGGCAACAACGAAGAAGGATAG ATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCEST: gi|71860950|gb|DT010005.1|DT010005
genomic: TGCTCTGCTGCCTTCTGCACCTGCTCCTGGGCAACAACGAAGAAGGATAGgtgtgtggta ... ttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTC
EST: TGCTCTGCTGCCTTCTGCACCTGCTCCTGGGCAACAACGAAGAAGGATAG ATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCEST: gi|83274402|gb|DV938499.1|DV938499
genomic: TGCTCTGCTGCCTTCTGCACCTGCTCCTGGGCAACAACGAAGAAGGATAGgtgtgtggta ... ttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTC
EST: GCACCTGCTCCTGGGCAACAACGAAGAAGGATAG ATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTC
genomic: GCACCTGCTCCTGGGCAACAACGAAGAAGGATAGgtgtgtggta ... ttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTC
gttatttaggatctcctcatttcttgttcatgcagctaatgctacttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCGGCCTTCTCCATCCATTCGAAACCAACTTGAGGTTGCTGCTAGTCTAAA
agctaat putative branch site (score: 3)
ctacttc CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtcaacttgaaatgtcttctattgcaatgagtttctaatgctgttatttaggatctcctcatttcttgttcatgcagctaatgctacttcattgcagATGGTAGCGAGCAGAAAAAGAAACGGATGAAGACTGATTCAGATATCTCTCGGCCTTCTCCATCCATTCGAAACCAACTTGAGGTTGCTGCTAGTCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - -tgtcttc
- - - - - - - - - - - - - -caatgag
- - - - - - - - - - - - - - - - - - -ctaatgc