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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcttatccttcttccttgagtaccatttttgtgttggtttcagctaagagacccatcttaaccaaatcattggacttctgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA

Basic information

species Vitis vinifera
transcript Vv14s0060g02280.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G42100.1 (Glycine max), 3'ss of exon 4
gtaagattcttatccttcttccttgagtaccatttttgtgttggtttcagctaagagacccatcttaaccaaatcattggacttctgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA
||||||| ||| | | |      | ||   | ||||  |     || ||  | |  ||    | ||| |   |    | || || |||    |||||||| ||||| || ||||||| |||||||| ||||| |||||||| || || ||||| |||| |||||| ||||||||||| ||||||||||||||||| ||
gtaagatcctttttcctgcagact-agcctccttttcatcaaacttacatttcactgaatt-tgttatctcgac---ttgaattttga---gatgcagATCATGATGTACTGGGACAACATGCTATATTTGCTGAACATACGGCTGTATCATCTGCTAGTCATCCTTGCCCATATATTGCCTACTTTGGACCAATACA

upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G38050.2 (Glycine max), 3'ss of exon 4
gtaagattcttatccttcttccttgagtaccatttttgtgttggtttcagctaagagacccatcttaaccaaatcattggacttctgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA
||||    ||| ||| | ||  ||   ||   || |||| |||  ||   || | |           |  || | | |||| |  |||    |||||||| ||||| |||||||||| |||||||| ||||| ||||||||||| || ||||| || | |||||| ||||| ||||| || |||||||||||||| ||
gtaatcagcttctccatttttttt---taaagttgttgt-ttgcattgtactgaaa---------ctattaattaactggaatgatga---gatgcagATCATGATGTATTGGGACAACATGCTATATTTGCTGAACATACAGCTGTGTCATCTGCCAGTCATCCTTGCCCGTATATTGCTTACTTTGGACCAATACA

upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G39490.1 (Glycine max), 3'ss of exon 4
gtaagattcttatccttcttccttgagtaccatttttgtgttggtttcagctaagagacccatcttaaccaaatcattggacttctgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA
||||||||||| | | |   |  | ||   | ||||  |     || ||  | |  |     | ||| |     || | || || |||    |||||||| ||||| |  ||||||| || ||||| ||||| ||||||||||| || ||||| |||| |||||| ||||| ||||| ||||||||||||||||| ||
gtaagattctttttcctgcacact-agcctcgttttcatccaacttacatttgactgtatt-tgttatct---ccacttgaattttga---gatgcagATCATGATATGCTGGGACAACAGGCTATATTTGCAGAACATACAGCTGTATCATCTGCTAGTCATCCTTGCCCGTATATTGCCTACTTTGGACCAATACA

upper sequence: Vv14s0060g02280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G29230.1 (Glycine max), 3'ss of exon 4
gtaagattcttatccttcttccttgagtaccatttttgtgttggtttcagctaagagacccatcttaaccaaatcattggacttc-----tgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA
||||||       | ||  |   | |  | | | |   | ||  ||| || | |      |||   |   |||  |||      |     ||||   |||||||| ||||| |||||||||| ||||| || ||||| ||||||||||| || ||||| || |  ||||| ||||| ||||| || |||||||||||||| ||
gtaagagatcc--cttttctagctaatcagcttctccattttc-tttaagttgatgtttacattgcactgaaactattaattaactggaatgatgagatgcagATCATGATGTATTGGGACAACATGCCATATTTGCTGAACATACAGCTGTGTCATCTGCCAGCCATCCTTGCCCGTATATTGCTTACTTTGGACCAATACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966052|gb|GW837419.1|GW837419
EST:     CGAAGGGGATTTCTCCTCAACCTCAT                         ATAATGATCTATTGGGACAGGATGCTATCTTTGCCGAACATACAGCGGTTT
genomic: CGAAGGGGATTTCTCCTCAACCTCATgtaagattct ... tttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcagctaagagacccatcttaaccaaatcattggacttctgatttaatgcagATAATGATCTATTGGGACAGCATGCTATCTTTGCCGAACATACAGCGGTTTCATCGGCTACTCATCCATGCCCATATATCGCCTACTTTGGACCAATTCA
                                          tgatttaat  TA-rich tract