1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attttctagttcctttagaatgaagcagtctctcattgttagagtatgaatacaatctatttattttggccttcttacatggatgttattgcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTCGCTGCAGGAACCAAGGGTAAACGGTTTATGATGCCGCATGCCAAAG
species | Vitis vinifera |
transcript | Vv14s0060g02160.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAG ATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTTEST: gi|110385484|gb|EC950016.1|EC950016
genomic: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAGgtaattttct ... gcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTC
EST: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAG ATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTTEST: gi|110383404|gb|EC947776.1|EC947776
genomic: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAGgtaattttct ... gcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTC
EST: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAG ATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTC
genomic: AGACTGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTAAAAAATGAGgtaattttct ... gcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTC
atgaatacaatctatttattttggccttcttacatggatgttattgcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTCGCTGCAGGAACCAAGGGTAAACGGTTTATGATGCCGCATGCCAAAG
ttcttac putative branch site (score: 2)
tacaatctatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttctagttcctttagaatgaagcagtctctcattgttagagtatgaatacaatctatttattttggccttcttacatggatgttattgcatctgtagATACATACAGTTGCCGTTGGAGCTGCTATAGGCCAGGCTTGTCTTCTGCTCGCTGCAGGAACCAAGGGTAAACGGTTTATGATGCCGCATGCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - agaatgaa
- - - - - - - - - - - - -cagtctc
- - - - - - - - - - - - - - - - - - - - - - - - aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt