1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagaatccatatctttacgatatgcctgttattttcttccacaaagaacaatttttcatgctgtcattttctggttttctgtgccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTTCAAACTATGCGTCTTCTTGACC
species | Vitis vinifera |
transcript | Vv14s0060g00600.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|32270380|gb|CD719539.1|CD719539
genomic: ATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|32270854|gb|CD720013.1|CD720013
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71862026|gb|DT011081.1|DT011081
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|46917569|gb|CN546898.1|CN546898
genomic: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|156737184|gb|EV241305.1|EV241305
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: GCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|161714435|gb|FC064434.1|FC064434
genomic: GCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: GGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30326170|gb|CD009432.1|CD009432
genomic: GGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71858122|gb|DT007177.1|DT007177
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|161718942|gb|FC067353.1|FC067353
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|110712249|gb|EE089658.1|EE089658
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30256245|gb|CB972088.1|CB972088
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|110689423|gb|EE065633.1|EE065633
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30327244|gb|CD010506.1|CD010506
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|161713248|gb|FC063076.1|FC063076
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAACAAGGTTCTTCAAEST: gi|161718839|gb|FC065074.1|FC065074
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|33405711|gb|CF211338.1|CF211338
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71858672|gb|DT007727.1|DT007727
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|32247650|gb|CD713469.1|CD713469
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30327832|gb|CD011094.1|CD011094
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71861763|gb|DT010818.1|DT010818
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30327902|gb|CD011164.1|CD011164
genomic: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30325367|gb|CD008629.1|CD008629
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30325513|gb|CD008775.1|CD008775
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|110687881|gb|EE065793.1|EE065793
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|34547149|gb|CF515381.1|CF515381
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30325747|gb|CD009009.1|CD009009
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30325454|gb|CD008716.1|CD008716
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71859213|gb|DT008268.1|DT008268
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCGA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71864551|gb|DT013606.1|DT013606
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|71864720|gb|DT013775.1|DT013775
genomic: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAEST: gi|30323811|gb|CD007073.1|CD007073
genomic: CTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAA GCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCGTTGTTGGGCATGGATCATTTGGAGTTGTTTTTCAAgtaagaatcc ... gccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAA
tccacaaagaacaatttttcatgctgtcattttctggttttctgtgccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTTCAAACTATGCGTCTTCTTGACC
ccttatc CT-rich tract
aaagaacaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatccatatctttacgatatgcctgttattttcttccacaaagaacaatttttcatgctgtcattttctggttttctgtgccttatcagGCAAAATGCTTAGAGACCGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGATATAAGAACCGTGAACTTCAAACTATGCGTCTTCTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC