1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgcatccttaaatccatgctattttatgttgtgaaagtctttgttattttggccatcctaatgaaggttaatgagcattcttctatcctttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATTAATAAGAAGATTATTGATCCTGTCTGTCCCAGACATACTGCTGTTATTG
species | Vitis vinifera |
transcript | Vv14s0060g00110.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAG GGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATTEST: gi|30296911|gb|CB973705.1|CB973705
genomic: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAGgtaagacaat ... ttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATT
EST: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAG GGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATTEST: gi|30252384|gb|CB969935.1|CB969935
genomic: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAGgtaagacaat ... ttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATT
EST: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAG GGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATT
genomic: TGCGTAGAGGTCTGAAAATTGACGCATTGATACAATTCATCCTTGAACAGgtaagacaat ... ttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATT
tattttggccatcctaatgaaggttaatgagcattcttctatcctttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATTAATAAGAAGATTATTGATCCTGTCTGTCCCAGACATACTGCTGTTATTG
cattcttctatccttt CT-rich tract
taatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatccttaaatccatgctattttatgttgtgaaagtctttgttattttggccatcctaatgaaggttaatgagcattcttctatcctttggtttcagGGGGCATCGAAAAATCTCAATCTCATGGAATGGGATAAACTCTGGACCATTAATAAGAAGATTATTGATCCTGTCTGTCCCAGACATACTGCTGTTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- gcatcct
- - - - - - - ccatgct
- - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcct