Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGTGATTTTAGTTGCATCCTGGACCCCATATCTGGCCATGGGGTTTCTAATA

Basic information

species Vitis vinifera
transcript Vv14s0030g01620.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G37190.2 (Glycine max), 3'ss of exon 4
gtaagaagtgaataaatttgcagtggtacctttttct-----ctcatttaactcattctcacctccctatttcccatttcttgcta-----acagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGTGATTTTAGTTGCATCCTGGACCCCATATCTGGCCATGGGG--TTTCTAATA-
    | | ||   || | || | || |  || ||  |     || || ||| |   |   |      ||    |   |  ||| ||      ||||| ||||||   |||||||||||||| ||||| ||||||||||||| |    ||  |   |  ||  |      |   | | || || ||   ||||||||  
----gtaatg--caattctgtattgttgactattgtttacagcttatataattttcttataaacaaataacctctggtgtttgttatttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAACATCCTGTCTTGATTTTAAGGTTC---TTTTGCTATTGGTATTTTCTAATGG

upper sequence: Vv14s0030g01620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G40530.1 (Glycine max), 3'ss of exon 4
--------gtaagaagtgaataaatttgcagtggtacctttttctctcatttaactcattctcacctccctatttcccatttcttgctaa--cagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGTGATTTTAGTTGCATCCTGGACCCCATATCTGGCCATGG-GGTTTCTAATA---
        |||   | | ||||| ||| |  |     ||| | |  ||  ||   |||||   |       || |  ||| | | | |    ||||||||||||   |||||||||||||| ||||| ||||||| |||||   |  |   | ||| |  |   |     ||   |||   ||| | ||| |||||   
gtaattttgtagcca-tcaataattttcc--ttacctcttatgcgatc-cttgtttcattaaaattataacatatgacatgtatggtttgtgcagACCAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATAAGTTTTGAGACACCCT-GTTACTCCTAAGGTTAAAT---TGGTTTTGGTGCTTTGTAATAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550927|gb|CF519135.1|CF519135
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110362912|gb|EC926471.1|EC926471
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30321070|gb|CD004332.1|CD004332
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71866240|gb|DT015295.1|DT015295
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|33406884|gb|CF212511.1|CF212511
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71872113|gb|DT021168.1|DT021168
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|18458660|gb|BM436938.1|BM436938
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30135948|gb|CB921286.1|CB921286
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|37184145|gb|CF603499.1|CF603499
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351029237|gb|FQ435437.1|FQ435437
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71874519|gb|DT023574.1|DT023574
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110714825|gb|EE092178.1|EE092178
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110701352|gb|EE078828.1|EE078828
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAAGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110407407|gb|EC973007.1|EC973007
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|37187949|gb|CF607300.1|CF607300
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|33406976|gb|CF212603.1|CF212603
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|352785814|gb|FQ475817.1|FQ475817
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|46919451|gb|CN548780.1|CN548780
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110694122|gb|EE070954.1|EE070954
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32458654|gb|CD799828.1|CD799828
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71886870|gb|DT035925.1|DT035925
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351053839|gb|FQ441605.1|FQ441605
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32268605|gb|CD717764.1|CD717764
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110402749|gb|EC963356.1|EC963356
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|87585712|gb|DY474319.1|DY474319
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|32269613|gb|CD718772.1|CD718772
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110400221|gb|EC966773.1|EC966773
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110707923|gb|EE084876.1|EE084876
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|34319409|gb|CF372163.1|CF372163
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCG
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCG
EST: gi|351049488|gb|FQ429110.1|FQ429110
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110391519|gb|EC956500.1|EC956500
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|34416045|gb|CF414799.1|CF414799
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCG
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCG
EST: gi|77578503|gb|DV218045.1|DV218045
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|22007443|gb|BQ792477.1|BQ792477
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110701262|gb|EE078640.1|EE078640
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|161718020|gb|FC068553.1|FC068553
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30253086|gb|CB970637.1|CB970637
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30296070|gb|CB972864.1|CB972864
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|110396446|gb|EC962132.1|EC962132
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|30253161|gb|CB970712.1|CB970712
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|87585035|gb|DY473961.1|DY473961
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|349813139|gb|FQ411379.1|FQ411379
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|71889488|gb|DT038543.1|DT038543
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
EST: gi|351026260|gb|FQ428272.1|FQ428272
EST:     AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAG                         ACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT
genomic: AAATGAAGGAGAGGAAGAATAGGTCCAAGAAGGTCCGAGGTGTAAAGAAGgtaagaagtg ... ttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctctcatttaactcattctcacctccctatttcccatttcttgctaacagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGTGATTTTAGTTGCATCCTGGACCCCATATCTGGCCATGGGGTTTCTAATA
                    ttctcac  putative branch site (score: 2)
                ctcattctcacctccc  CT-rich tract
        tcatttaa  TA-rich tract