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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcctcaatctagtttttctatgaagcaaagaatttcactggcatttattgagtcgagatactaaattttttctttaattttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00750.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00750.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G42870.2 (Glycine max), 3'ss of exon 3
gtattcctcaatctagtttttctatgaagcaaagaatttcactggcatttattgagtcgagatact----aaattttttctttaattttt-tttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG
         | |||  | |  ||  |||| ||| |       ||   | | ||   | |  ||  |     ||    ||||||| ||||| ||  |||||| ||| || | ||  |  | || |||||||| |||||||||||| || | ||||  ||||| ||||||||||||||||||
----gttagattcttatataactgagaaggaaacatccgttatgagctgtttttctttggcatctttttctaaggccttctttactttttgttcacagGTTGTATCGTGTCACTGTTGTCTTTTACCATGCATTTTATCTTCCCTTTTTGTATACAACATTCCTAGCAGACTTTTTCCAG

upper sequence: Vv14s0030g00750.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G05010.1 (Arabidopsis thaliana), 3'ss of exon 4
----gtattcctcaatctagtttttctatgaagcaaagaatttcactggcat----ttattgagtcgagatactaaattttttctttaattttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG
    |   |    |    ||  || | || ||   |  ||  ||       |    || |||  || |        |  |     || |   || ||||||||| |||||  | ||||   |||  ||||| ||||| |||||||| ||| | ||| |||| ||||| |||||||||||||||
gtaagccctttagataaaagccttacaatcaaaagagtaacatcgtctaagtcagattcttgcttctaacattaggaaatacaaattgaaaattcttgcagGTTGTATGGGATCACAAGTGTTTGTTACCACGCCTTCTATCTTCCTCTTTTGTATGTTACTTTTCTTGCAGACTTTTTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131882|gb|CB917221.1|CB917221
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|22012612|gb|BQ797646.1|BQ797646
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|110365218|gb|EC927851.1|EC927851
EST:     GCATTGTTTGCTTGTGGGCTTACGGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|30133320|gb|CB918659.1|CB918659
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|110703012|gb|EE079484.1|EE079484
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|110414461|gb|EC980293.1|EC980293
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
EST: gi|110394639|gb|EC959842.1|EC959842
EST:     GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTG                         GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT
genomic: GCATTGTTTGCTTGTGGGCTTACAGGAAATGGGGCTGGTTTTGGGTTCTGgtattcctca ... ttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactggcatttattgagtcgagatactaaattttttctttaattttttttgcagGTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAG
                               ttttttctttaatttt  CT-rich tract
                     agatactaaatttttt  TA-rich tract