Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacctgatcttattattttgtttcactaagattttcagtttcccaatttgagctattattgttttttccaccttttctttagCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00710.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G30020.1 (Glycine max), 3'ss of exon 5
gtattacctgatcttattattttgtttcactaagattttcagtttcccaatttgagctattattgttttttccaccttttctttagCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAG
    ||  | |  |    || |  | |  |||| |   ||   |||    |||||  |  || | | |  | |      | |  ||| |||||||| |||||| | ||||| |||||||||||||| ||||||
---gtattttacttctcaatctcatctacctaacaacctctcattcggtttttgactttctaatttatgatgc------tttccagCAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAG

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G37370.1 (Glycine max), 3'ss of exon 5
gtattacctgatcttattattttgtttcactaagattttcagtttcccaatttgagctattattgttttttccaccttttctttagCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAG
    ||  | |  |    || |  | |  |||  |   ||   |||    |||||  |  ||   ||| |   |  ||      ||| |||||||| |||||| | ||||| |||||||||||||| ||||||
---gtattttacttgccaatctcatctacctagcaacctctcattcggtttttgactttcta--atttatgataatttcc----agCAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAG

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 4
gtattacctgatctta-ttattttgtttcactaagattttcagtttcccaatttgagctattattgttttttccaccttttctttagCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAG
||||||  | ||   |  |  | | |||  |  |  || ||| ||  | ||| ||   | | | |   |||| ||  |||| || ||| |||||||| |||||| | |||||||||||||| ||||| ||||||
gtattatattattcaaactcatctatttggc--aacttatcaattgtc-aatctgttttgtgactcaatttttcaattttt-ttcagCAATTGGTGCAATATTTGCTGCAACAGATTCTGTCTGCACATTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagattttcagtttcccaatttgagctattattgttttttccaccttttctttagCCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAG
                         ctattattgttttttc  CT-rich tract
                          tattattgtttttt  TA-rich tract