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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgctatatatcagtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG

Basic information

species Vitis vinifera
transcript Vv14s0030g00570.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatcagtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
    | | | |||   ||| | |   || |  |  |    || | ||   |||   ||  |           |  | ||     |||  || |   |  | | | || |  ||||||||||||||||||||||||||||||||||||| | |   | ||    | |
----gtaagttatccttca-tctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgactta--taattccctcttac-tcattttactttt-cttccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatcagtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
    | | | |||   ||| | |   || |  |  |    || | ||   |||   || ||  |   |  |   |  | ||   | |    |  |  |||  | |||    ||||||||||||||| ||||||||||||||||||||| |||   | ||    | |
----gtaagttatccttca-tctgtcttgcgcctattccaagctataaattgtgtgct-ctgtattgcaataaggacttataattccctctaactcattttactttt---cttccagATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACG

upper sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatcagtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
                | ||    | ||  |   |  || |  | |   |     || | | | | |   | ||  | |||    | | || | |  | | | | || | |||| |||||||||||||||||  |||||||||||||| | | | | ||    |||
---------------gtaagccatccttgatctgtcttgcacctattcccaagctacaaatgg-cgtgcttgtattgcaataatataactcctctcatattttacttttctttc-agATTTCATGTGTATGACATTGATACAAAATATCATAGTGTTCCCACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctctctttagcgtaatcggttcaatcatgtgttttctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
                                              tgtttcc  CT-rich tract