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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttccttttcttgctgccatgtcgctcttttcttagaccagtctatatatttttgcttcagttatgttgctacctgtcttaagcattctgatgcattttatgtaagatatatacttttgttgctcagtttggtttaatattcacagGCCCTCAAGAATGAAATTAAACAAAGAGAATCCAAGTGGCATAAGGTGTATTGGGAAATGGTTGAACCAGTTGTTAAAATACGAACTTTGCGAGCTCGAA

Basic information

species Vitis vinifera
transcript Vv14s0030g00010.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G27395.2 (Arabidopsis thaliana), 3'ss of exon 8
gtatgttccttttcttgctgccatgtcgctcttttcttagaccagtctatatatttttgcttcagttatgttgctacctgtcttaagcattctgatgcattttatgtaagatatatacttttgttgctcagtttggtttaatattcacagGCCCTCAAGAATGAAATTAAACAAAGAGAATCCAAGTGGCATAAGGTGTATTGGGAAATGGTTGAACCAGTTGTTAAAATACGAACTTTGCGAGCTCGAA
                        ||   | ||   |   ||   |    |  |||||  |  | | | ||||           |||   | |||||  |||| |||||  | || | ||| ||| ||        || | ||||   |||| || ||||| |||||||||||||||||| ||| |||| ||   || || |||||||||||||| || ||||| ||||| |||||||| | ||||||| 
------------------------gtaagttttccatctaactgattatcagttttttcttgtattgaagttg-----------aaga--tgtgatg-gttttctgtaatgt-taaattttggtttctt-------ttcactatt---agGCACTGAAGAACGAAATTAAACAAAGAGAAGCCATGTGGGATGGTGTTTACTGGGAAATGGTTGAGCCGGTTGTCAAAATCCGAACTTTACAAGCTCGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattttatgtaagatatatacttttgttgctcagtttggtttaatattcacagGCCCTCAAGAATGAAATTAAACAAAGAGAATCCAAGTGGCATAAGGTGTATTGGGAAATGGTTGAACCAGTTGTTAAAATACGAACTTTGCGAGCTCGAA
                                        gtttaat  putative branch site (score: 4)
     tttatgtaagatatat  TA-rich tract