1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taacacttgttcactcatcatccagtgacttgcaagtatacagtatgcctataaagctatattagtttatatacttaacatcattgtcctattaatgcagTGTCTCACTGGAGGAGTTCTGTTACTGCGTAATAAGTTCTTTATCATACTTTATAGAGGCAAAGATTTTCTTCCTTGTAGAGTTGCAAATTTAATAGTTG
species | Vitis vinifera |
transcript | Vv14s0006g02680.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgcctataaagctatattagtttatatacttaacatcattgtcctattaatgcagTGTCTCACTGGAGGAGTTCTGTTACTGCGTAATAAGTTCTTTATCATACTTTATAGAGGCAAAGATTTTCTTCCTTGTAGAGTTGCAAATTTAATAGTTG
tattaat putative branch site (score: 2)
tcctatt CT-rich tract
ataaagctatattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacacttgttcactcatcatccagtgacttgcaagtatacagtatgcctataaagctatattagtttatatacttaacatcattgtcctattaatgcagTGTCTCACTGGAGGAGTTCTGTTACTGCGTAATAAGTTCTTTATCATACTTTATAGAGGCAAAGATTTTCTTCCTTGTAGAGTTGCAAATTTAATAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -cacttgt
- - - - - tcactca
- - - - - - - - -tcatcca
- - - - - - - - - - - - - - - -gcaagta
- - - - - - - - - - - - - - - - - - - - - gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - ataaagc