Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagcactgcttatcgttacatctctatgattaatggacatttatttaatgctggatagaaaggagtactttattggaaaagtttaaacagatttataattaagtttaacacatataatgtttgctgagtcattcaaattgtgtcttggctttgaggagattttggttcaatatgcagGGTCTTTCTCTGGCCTGGGGTTTCTATCATTGTACTTATCTGGAAAAATACGAGCATTTGACAATAGAGGCCATGTTGCAAAACTTTGCATTGTGTTTCT

Basic information

species Vitis vinifera
transcript Vv14s0006g02480.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G53100.2 (Glycine max), 3'ss of exon 5
gtaaggagcactgcttatcgttacatctctatgattaatggacattt---atttaatgctggatagaaaggagtactttattggaaaagtttaaacagatttataattaagtttaacacatataatgtttgctgagtcattcaaattgtgtcttggctttgaggagattttggttcaatatgcagGGTCTTTCTCTGGCCTGGGGTTTCTATCATTGTACTTATCTGGAAAAATACGAGCATTTGACAATAGAGGCCATGTTGCAAAACTTTGCATTGTGTTTCT
               ||| ||  ||| | | |  || ||| ||  ||   |  ||   || |  |       |||||| |||  || ||   |||   ||     | | ||||||    ||      | | || |   |||  | |    | || ||||| |  | |||||   |  || ||||||||| || ||||| ||||| ||| ||||||||||||||||||||||||||  |||||||||    | ||| ||||||||||||||||||||||| |||||
--------------gtat-gtagcatttatttatttcatgtactctttgtacataggtctagtaacttttctgtacttcatttcaatag---aaatgaatggtggaatcagtttaggttat------tctactcaa--attttattctattgtttgctttaa--atattttcaatttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAAAGCATTTGATCGCAAAGGTCATGTTGCAAAACTTTGCATTGTTTTTCT

upper sequence: Vv14s0006g02480.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G09820.1 (Glycine max), 3'ss of exon 5
gtaaggagcactgcttatcgttacatctctatgattaatg-gacatttatttaatgctggatagaaaggagtactttattggaaaagtttaaacagatttataattaagtttaacacatataatgtttgctgagtca---ttcaaattgtgtcttggctttgaggagattttggttcaatatgcagGGTCTTTCTCTGGCCTGGGGTTTCTATCATTGTACTTATCTGGAAAAATACGAGCATTTGACAATAGAGGCCATGTTGCAAAACTTTGCATTGTGTTTCT
               ||| ||  ||| |      || ||| |  |||| |  |  | |  | | ||| || |   ||  ||  |   |   ||   ||     | | |||||| | |||  || |  ||   | |||   |||   ||   | || | ||| |  | ||||   || | | ||||||||||||  |||| ||||| ||| ||||||||||||||||||||||||||  |||||||||    | ||| ||||||||||||||||||||||| ||| |
--------------gtat-gtagcattt----agttcatgtgttatttgtacagaggtctacaaaaaagactggctt--tgtcatgctcataatgcatggtggaattagtttagctcattcaaagcatgtgtactcaaatttctttttagttgtttgttttaaata-atttcaattta-tgtgcagGGTCTTTTGCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAAAGCATTTGATCGCAAAGGTCATGTTGCAAAACTTTGCATTGTTTTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgagtcattcaaattgtgtcttggctttgaggagattttggttcaatatgcagGGTCTTTCTCTGGCCTGGGGTTTCTATCATTGTACTTATCTGGAAAAATACGAGCATTTGACAATAGAGGCCATGTTGCAAAACTTTGCATTGTGTTTCT
        attcaaatt  TA-rich tract