1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaataaaaaataaaaaagacactattggaacattttttccccttgggaaggagaaaaaattctatttgaacaaaatctaacccttccatgtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAGCAATTTGCCAATTTAGCTATTCTAGAGTACCCTCAGATTCATGTTTTCC
species | Vitis vinifera |
transcript | Vv13s0156g00650.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAG GGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAGEST: gi|71888416|gb|DT037471.1|DT037471
genomic: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttcctt ... gtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAG
EST: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAG GGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAGEST: gi|71867335|gb|DT016390.1|DT016390
genomic: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttcctt ... gtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAG
EST: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAG GGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAG
genomic: GTGCAGAGCAGCTGGACTGCCTCAAGTTTTTCATTCGTAAATATCCAAAGgtatttcctt ... gtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAG
gggaaggagaaaaaattctatttgaacaaaatctaacccttccatgtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAGCAATTTGCCAATTTAGCTATTCTAGAGTACCCTCAGATTCATGTTTTCC
atctaac putative branch site (score: 2)
aaaaaattctatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaataaaaaataaaaaagacactattggaacattttttccccttgggaaggagaaaaaattctatttgaacaaaatctaacccttccatgtcactgcagGGCCCCAGGTCACCTTTCCATGAGTTGGATATAAGAGCTCCAATAAGACAGCAATTTGCCAATTTAGCTATTCTAGAGTACCCTCAGATTCATGTTTTCC
- - -aaaaaat
- - - - - - aaaaaag
- - - - - - - - - - - ctattgg
- - - - - - - - - - - - - - - - - - - tcccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa