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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaatgaaaaaccatacttttgatatgttaatgctgacatttggttgtaaagagtttgactcccattttcttccttttcttgtcctagATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGG

Basic information

species Vitis vinifera
transcript Vv13s0156g00640.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29786212|gb|CB343818.2|CB343818
EST:     AAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAG                         ATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGG
genomic: AAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAGgttgaatgaa ... cttgtcctagATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGG
EST: gi|71862099|gb|DT011154.1|DT011154
EST:     AAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAG                         ATGTGGGATTTGCTCCGGAGG
genomic: AAGAAGACAATATCAGAAAGTATACTACACCTGCATATAGAGCTCCTGAGgttgaatgaa ... cttgtcctagATGTGGGATTTGCTCCGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacatttggttgtaaagagtttgactcccattttcttccttttcttgtcctagATGTGGGATTTGCTCCGGAGGGAACTTATAAATGAGAAGGTAGACATTTGG
                     tttgactcccattttc  CT-rich tract
                               attttctt  TA-rich tract