Sequence
atgc intronic sequence ATGC exonic sequence...ttttttcagttcttcaatcattttaatcctttctttttttttggtaaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G42210.1 (Glycine max), 3'ss of exon 3
---ttttttcagttcttcaatcattttaatcctttctttttttttggtaaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
| |||| || | || ||| | |||| || | || | | || | ||| | | | | | || ||||| ||||||||||||||||||| ||||| ||||||||||| || |||||| | ||||| || |||||||||| || |||||||| ||||| |||| ||||||
ttgtgtttttgtttggtgctacacttttccctgatcttattctgtgctttcacaccttatttctgattga---catgctaatttctgtcatcttgcttgatagATAGACAGGTTTGGACACTTCAAGATATGGCATGGTGCTGGATCTTTATTGGTCGCAATTTCATTTTCGTCAGTTTTTGGTGGTTGTTTACCATGCAAAC
upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G16870.1 (Glycine max), 3'ss of exon 3
---ttttttcagttcttcaatcattttaatcctttctttttttttggtaaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
| |||| || | || ||| | |||| || | || | | || || ||| | || | | |||| || ||||| ||||||||||||||||||| ||||| ||||||||||| || |||||| | ||||| || |||||||||| || |||||||| ||||| |||| ||||||
ttgtgtttttctttggtgctacacttttccctgatcttattctgtgctttcagaccttatttttgattga---catgttaatttccgttgtcttgcttgatagATAGACAGGTTTGGACACTTCAAGATATGGCATGGTGCTGGATCTTTATTGGTGGCAATTTCATTTTCTTCTGTTTTTGGTGGTTGTTTACCATGCAAAC
upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G44280.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------ttttttcagttcttcaatcattttaatcctttctttttttttggt--aaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
|||| |||| |||||||| || | | | || | | | || ||| |||| ||||| ||||| ||| | || | |||||||| || || ||||| ||||||||||| ||||||| |||||||| | || |||||| | ||||||||||| |||||||||||||| | ||||| |
gtaacttcttttggaacttttgagtt-ttcaatcacacaaaatttgtagtcttgtgtaatttaaggtaaatctgagttgatgtaaaatgattttttgttc--tacttcatatgacagATTGATAGATTTGGGCATTTCAAAATTTGGCATGCTGCAGGATCCTTATTAGTTGCTATCTCATTTTCCTCTGTTTTTGGCGGTTGTTTGCCTTGTTCAC
upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G60070.1 (Arabidopsis thaliana), 3'ss of exon 3
-------ttttttcagttcttcaatca--ttttaatcctttctttttttttggtaaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
|| || ||| | | | | |||| || ||| || | || || | ||||| | | | || | | || | |||| | | ||||| || ||||||||||||||||| || ||||||| |||||||| | ||||||| | || ||||||||||||||||| ||||| || ||||| |
gtactctacttctctgtttctgatttagtctttagcttgttgtttcttactagtggtgctaatt-cagtttgaggtagatgaatatggtctt-ctgttat----ggcagATTGATAGGTTTGGACATTTCAAGATTTGGCATGCTGCAGGATCATTACTGGTTGCAATCTCGTTTTCCTCCGTTTTTGGAGGTTGTCTGCCTTGTTCGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706475|gb|FC054996.1|FC054996EST: TTTCAGGACAGATAGCTGATGGATTCACAACCATATTTGCCGGTGAACTG ATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTG
genomic: TTTCAGGACAGATAGCTGATGGATTCACAACCATATTTGCCGGTGAACTGgtatttctga ... tacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
ttttactt CT-rich tract
tgaaaataatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttcagttcttcaatcattttaatcctttctttttttttggtaaataaaactacagttagctgaaaataattttgccttcattgttttacttgacagATAGACAGGTTTGGACATTTCAAAATATGGCATGGGGCAGGATCTATTTTGGTTGCTGTTTCATTTTCCTCCGTTTTTGGCGGTTGCCTACCTTGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - -tcaatca
- - - - - - - - - - - - - tcctttc
- - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa