1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaagtgtgtaaagcttttgtggtagtaaaactgcttctgtgtaggcatgctgttttgtctgatcaaactaagttccaatgtgggcatactttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAATGGCACCATCACTGAGACCCAACGCAAGCGTATACGACTGACCCGTTA
species | Vitis vinifera |
transcript | Vv13s0101g00100.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110411687|gb|EC977410.1|EC977410
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110410525|gb|EC976208.1|EC976208
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|30305062|gb|CB981856.1|CB981856
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|349827778|gb|FQ422646.1|FQ422646
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110401758|gb|EC968377.1|EC968377
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110422162|gb|EC988477.1|EC988477
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110384273|gb|EC948699.1|EC948699
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|30305004|gb|CB981798.1|CB981798
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26258672|gb|CA809735.1|CA809735
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGC-ACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110379714|gb|EC944932.1|EC944932
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|22011850|gb|BQ796884.1|BQ796884
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110360228|gb|EC923056.1|EC923056
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26267150|gb|CA818213.1|CA818213
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26257860|gb|CA808923.1|CA808923
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGC-ACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCCCTGATGCGGAAGGCAGGTTATAEST: gi|110373876|gb|EC938294.1|EC938294
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110390064|gb|EC954950.1|EC954950
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|34544852|gb|CF513084.1|CF513084
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110362338|gb|EC925866.1|EC925866
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26258698|gb|CA809761.1|CA809761
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26265055|gb|CA816118.1|CA816118
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26265515|gb|CA816578.1|CA816578
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGGTGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|33408857|gb|CF214484.1|CF214484
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26257886|gb|CA808949.1|CA808949
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110358301|gb|EC922414.1|EC922414
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|33410301|gb|CF215928.1|CF215928
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|33410379|gb|CF216006.1|CF216006
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110369937|gb|EC934110.1|EC934110
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|34549687|gb|CF517919.1|CF517919
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|26267720|gb|CA818783.1|CA818783
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGGTGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAEST: gi|110375798|gb|EC940817.1|EC940817
genomic: TAATACAAGGCGAAGTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
EST: GTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAG GTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
genomic: GTGCCACATATTTGCCCGAGGTGGCTGCCCATGAAGgttagctttg ... ttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATA
catgctgttttgtctgatcaaactaagttccaatgtgggcatactttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAATGGCACCATCACTGAGACCCAACGCAAGCGTATACGACTGACCCGTTA
gtctgat putative branch site (score: 4)
aaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgtgtaaagcttttgtggtagtaaaactgcttctgtgtaggcatgctgttttgtctgatcaaactaagttccaatgtgggcatactttggattcagGTTGGACAAAGATGGAGGCAATTGACTCACTGATGCGGAAGGCAGGTTATAATGGCACCATCACTGAGACCCAACGCAAGCGTATACGACTGACCCGTTA
- - - - - - - - ttgtggt
- - - - - - - - - - - - gtaaaac
- - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatact