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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagacaaaattccacatggaaacagccttttttttccctggtattccagctaattctagcacattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaagGTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCAGAAGGACTTTATGTTGCAG

Basic information

species Vitis vinifera
transcript Vv13s0084g00830.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128013|gb|CB913352.1|CB913352
EST:     ATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAAT                         GTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCA
genomic: ATGAAAGATGACCCAGAAACTGATAAAGTATTTGGATGGGTGCTAGAAATgtgagacaaa ... ttgaacaaagGTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattttggtgttagtaacaaccttttttttttttttttcctttcttgaacaaagGTATGCATATGCAGTAGCATCTGCCTTGCATGGCGTGCAGCATATTCTTCAGAAGGACTTTATGTTGCAG
            tagtaac  putative branch site (score: 1)
               taacaacctttttttt  CT-rich tract
           ttagtaacaacctttt  TA-rich tract