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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaattggttaacaagtatgggaccagaagataaaagaagaaaaacaagctgtacatgtttgatttcccatagatttaactttatttgttctgtttcattgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTTATTTGCTTTATTGGCACTCTACAAGCCATTGCTGTCACCTTTGTTATGG

Basic information

species Vitis vinifera
transcript Vv13s0084g00090.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G36200.1 (Glycine max), 3'ss of exon 4
-------------------------------gtaatttaattggttaacaagtatgggaccagaagataaaa-------gaagaaaaacaagctgtacatgt-ttgatttcccatagat--ttaactttatttgttctgtttcattgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTTATTTGCTTTATTGGCACTCTACAAGCCATTGCTGTCACCTTTGTTATGG
                                 ||   |||  | ||||    ||||   |      |              |  |   |   |||   | | ||| | || || | ||  || || ||  || |  | | |   |  |   |||||  | ||  |  |||| |||||| | ||||||||   ||| ||| | ||| | ||||||||||||||||| ||||| |||||||| || |||||| | |
gtaagtgagacatcaagaagctagaaaaagaaaaaaaaaatgtgctaacttcgatggtgtctctctttctcttgctttttgtgctagctagtgtgtctttttgttggtgtcacacaaataattgacctttgttttattttcttgctattgggcagGCCAAAGCTATTCAGACGTACAAGAATCATCAGCTAAGTCTAACTTCACTTGTGTGCTTTATTGGCACTCTTCAAGCTATTGCTGTTACTTTTGTTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720884|gb|EE097197.1|EE097197
EST:     TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAG                         GCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTT
genomic: TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAGgtaatttaat ... tgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTT
EST: gi|28969851|gb|CB348884.1|CB348884
EST:     TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAG                         GCGCATGCATTGAGGACATACAAGCACCATCAGCTCTCTCTCACTACCCTT
genomic: TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAGgtaatttaat ... tgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTT
EST: gi|352791162|gb|FQ477489.1|FQ477489
EST:     TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAG                         GCGCATGCATTGAAGACATACAAGCACCATCAGC
genomic: TCTTCGTCATCATTGCAACACTTGCCTGGGCTTCTTTGTTCGTTTTACAGgtaatttaat ... tgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtttgatttcccatagatttaactttatttgttctgtttcattgatcaccagGCGCATGCATTGAAGACATACAAGCACCATCAGCTCTCTCTCACTACCCTTATTTGCTTTATTGGCACTCTACAAGCCATTGCTGTCACCTTTGTTATGG
                                       tttcatt  CT-rich tract
               atagatttaactttat  TA-rich tract