Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactctagcaaatctaagttcatgttatgatgtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os02g32730.1 (Oryza sativa), 3'ss of exon 3
gtaaatcaatacagcagagcatgttttaagaagaacta--atttcacttgcattagaatttaaactctagcaaatctaagttcatgttatgat-gtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
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-------------gtagagctactaatggagatagctagcacatcctcttttttgctactctgcttctactaactcttaactggatatgtgattgatggtttcagGTCTATGGTGGATCATATTACTTAGGGCGTATGGAAAGTGTTCAGGAGATCTGACAGTTCAGGAGAGAATTGATGTTCAGACTGGAATTAAAATGATATT
upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os04g33490.1 (Oryza sativa), 3'ss of exon 2
gtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactcta-gcaaatctaagttcatgttatgatgtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
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-------------------------gtgggtatagatgacgttccttatctcctattttgcgcacagcataaagatgtggcactttaacaatggt--tttcagGTTTATGGTGGATCATATTGCTGAGAGCATACGGAAAATGTTCAGGCGATCTGTCGGTTCAGGAGAGAATTGATGTCCAGACTGGAATAAAGATGATCTT
upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G31920.1 (Glycine max), 3'ss of exon 2
gtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactctagcaaatctaagttcatgttatgatgt-caacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
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gtaaaataaataatcaaatcaa----tagaaatattttcttaca-tagctgaagaaacttaccataactctccttggattgctgaacatatatatgatctcagGATTGTGGTGGATTATTTTATTACGGGCATATGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTGCAAACAGGAATTAAGATGATATT
upper sequence: Vv13s0074g00720.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G15220.1 (Glycine max), 3'ss of exon 3
gtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactctagcaaatctaagtt------catgttatgatgtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
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gtaaaataaataatcaaatcaa----tagaaatattttcttaca-tagcagaagaaacttaccataatactccttgggttgctgaacatattgcacctgtgatctcagGATTGTGGTGGATTATTTTATTACGAGCATACGGAAAATGCTCTGGTGATCTATCAGTTCAGGAGAGAGTTGATGTTCAAACAGGAATTAAGATGATTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732966|gb|EE108716.1|EE108716EST: TCCTGATTTTGGAGAAGCAGCAATTGGCCGTGTTGCACCTGTTGACTCTG GATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATC
genomic: TCCTGATTTTGGAGAAGCAGCAATTGGCCGTGTTGCACCTGTTGACTCTGgtaaatcaat ... tcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcattagaatttaaactctagcaaatctaagttcatgttatgatgtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
agaatttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactctagcaaatctaagttcatgttatgatgtcaacttcagGATTGTGGTGGATTATACTGTTACGTGCTTATGGAAAATGCTCTGGAGATCTTTCAGTTCAGGAGAGAATTGATGTGCAAACTGGAATTAAGATGATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG