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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccaaattgtctttttcttttgatgattgttgttgtttatttgtttatttatttatttcctcctttttattttaacccaaaaaaacatgagaatagaatgaaattgagatggctatttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCATCTTTGCTGAAACCAGGGGGTTACTTTTTTGGCATTACACCTGACTCAT

Basic information

species Vitis vinifera
transcript Vv13s0074g00190.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855291|gb|DT004346.1|DT004346
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAATGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|110685378|gb|EE062046.1|EE062046
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATNAAGGAAGAAGACTTCTACATAATGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|30126088|gb|CB911427.1|CB911427
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|110722057|gb|EE097952.1|EE097952
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
EST: gi|161708045|gb|FC056094.1|FC056094
EST:     GGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGC-TTATACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGC
genomic: GGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATT-TACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGC
EST: gi|110703995|gb|EE081418.1|EE081418
EST:     AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAG                         TTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA
genomic: AGGACAAGTGCAATACTGCTGATGTTGTTTGCTGCTTGCAGCATTTACAGgttccaaatt ... ttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacccaaaaaaacatgagaatagaatgaaattgagatggctatttacttgcagTTGGGTTTTGAAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCATCTTTGCTGAAACCAGGGGGTTACTTTTTTGGCATTACACCTGACTCAT
 ttttaac  putative branch site (score: 2)
                                            tttactt  putative PPT
                    aatagaatgaaatt  TA-rich tract