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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagtagttatatatgttgctgctatttttgttagaagtttgatttatcatcctaatagcaaagagttagtttctcattgtaaataagacccttattttctacattggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCCTGCCATATCTTGTGGTGTTTTTGG

Basic information

species Vitis vinifera
transcript Vv13s0067g02950.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034809|gb|FQ458166.1|FQ458166
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|71876452|gb|DT025507.1|DT025507
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|351014566|gb|FQ437568.1|FQ437568
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|349812975|gb|FQ411215.1|FQ411215
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|34550530|gb|CF518748.1|CF518748
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|110690444|gb|EE067550.1|EE067550
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|351014429|gb|FQ437431.1|FQ437431
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|34550147|gb|CF518365.1|CF518365
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|349815351|gb|FQ400506.1|FQ400506
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
EST: gi|71858450|gb|DT007505.1|DT007505
EST:     ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGC                         GAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC
genomic: ATTTATGACGTTGATAGCAACCCTGAAGCCTCTCTTAAAAGTGCATACGCgtatgtagta ... ttggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagagttagtttctcattgtaaataagacccttattttctacattggttacagGAACTGCTTGAGTCTCGCCAAAGAGAATAACGTTCAGTATATCGCCTTTCCTGCCATATCTTGTGGTGTTTTTGG
                                 ttattttctacatt  TA-rich tract