1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcattagcaaatcttccagtccaacttgtgccctaaagttagattgggatttaggtcctgcaatctaaggtggaagttcacactccttatttcttgcagCTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTGTGGATTTAAATGGAATCGGGCTTGTAATATATCAGAAGCCTGTCTCATC
species | Vitis vinifera |
transcript | Vv13s0067g01690.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTACACCTGTGTATCGTAAGGATGAAAGAGATCAGAGTGTCTGGAATG CTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTGEST: gi|30255679|gb|CB971811.1|CB971811
genomic: TGCTACACCTGTGTATCGTAAGGATGAAAGAGATCAGAGTGTCTGGAATGgtttgtgatc ... tttcttgcagCTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTG
EST: TGCTACACCTGTGTATCGTAAGGATGAAAGAGATCAGAGTGTCTGGAATG CTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTG
genomic: TGCTACACCTGTGTATCGTAAGGATGAAAGAGATCAGAGTGTCTGGAATGgtttgtgatc ... tttcttgcagCTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTG
tgggatttaggtcctgcaatctaaggtggaagttcacactccttatttcttgcagCTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTGTGGATTTAAATGGAATCGGGCTTGTAATATATCAGAAGCCTGTCTCATC
cactccttatttctt CT-rich tract
ttatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcattagcaaatcttccagtccaacttgtgccctaaagttagattgggatttaggtcctgcaatctaaggtggaagttcacactccttatttcttgcagCTATGGTTAATGTGACAAAATCTATTTGCTGGAAGGTTGTGGCCAAGACTGTGGATTTAAATGGAATCGGGCTTGTAATATATCAGAAGCCTGTCTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - tcttcca
- - - - - - - - - - tccaact
- - - - - - - - - - - - - - -tgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgca