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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT

Basic information

species Vitis vinifera
transcript Vv13s0067g01290.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                                    | |   | | ||   ||  |||||  |||| |   ||   |  ||||     | ||   |||||  |     |  | |    |    |  |||    ||  | | ||     | | ||  ||| ||||||||||| |  || ||||| || ||||| |||||| |||  |||||||| || || ||||||||||||||||||||||| |||||| | ||  |
-----------------------------------gtattgaactatt---gatctgaac--ttttgtccaattatt--attcgctgctttgcattatttggatcatat-ccatacaaaccaatgattttttttgcatgtatt--tgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggtt--ttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                 |   ||||| |   ||   |   |  || |       ||   |  |  | || |||   |||  |||| |  ||   | |     |  || | | ||||| || | ||  ||  |||  ||   |||  |   | | ||  ||| ||||||||||| |  || ||||| || ||||| |||||| |||  |||||||| || || ||||||||||||||||||||||| |||||| | ||  |
-----------------gtattgaactat--tgatctgaacttttgtccaattattattcgctgct-ttgcattatttggatcatatccat---acaaaccaa--tgattttttttgcatgtatttgttgtaatttttgcatgtatttgttgtaatacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G35460.1 (Glycine max), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                      | |  |   ||  |     || |  |    |  |  |   |||| |    |       |||  |||||||    |||     |  ||||  ||| |  |  |   |     ||  | || | | | |  | | ||||||| |||||||||||||| ||||||||||| || || ||| ||| |||||| || |||||||| ||| |||||||||| |||||||| |||||||| ||
----------------------gtaagacaatgataaactgcaattctgcttaactacatggttttgtgctgtt------ttccagtttatg---cattgctgttcagtgttattttg-ctcatcagtatatttgtctgtgctatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCGAATTTGGCAAACAACCAAATAATTAATTATAGATGTGATCCTTCTGAAAAATGGTTGGTCTT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                      | |  |   ||  |     || |  |    |  |  |   |||| |  | |       |||  |||| ||    | |     |  ||||  ||| |  |  | | |     ||  | || | | | |  | | ||||||| |||||||||||||| ||||||||||| || || ||| ||| ||||||||| |||||||| ||| |||||||||| ||||| || |||||||| ||
----------------------gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgtt------ttccagtttttg---cactgctgttcagtgttattttg-ctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgttt--ccaatggttt-tgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                  |   ||  |    | || |  |  | | |||  | |||  ||   | |||||    | ||   |  | ||||||   | |     ||||  || | |   | ||||||  |     ||||||  || | | | |  | | ||||||| ||||||||||| || ||||||||||| || || ||| ||| |||||| ||||||||||| ||||||||||| ||  | ||||| |||||||||||
------------------gtaagatgataatttgcttaactaaatatttttgtgttatac---tatattttccagtttacgtattctttatgcagtgt----gcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttt-tgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                  |   ||  |    | ||    |  | | |||  | |||  ||   | |||||    | |    |  | ||||  || |  ||  | ||  ||    |||  ||   || | |  ||||||  || | | | |  | | ||||||| ||||||||||| || ||||||||||| || || ||| ||| |||||| ||||||||||| ||||||||||| ||  | ||||| |||||||| ||
------------------gtaagatgataatttgctcaactaaatatttttgtgttatac---tatattttccagttcacatattctttacagtgtgcttgtagtttctgcaaattg--ttgactggtac--atggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTCTT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S7_102V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttg-attcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcattt-------agGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                                                                  |   | || |||| |||  |  ||   | || || |   |   | |  | |   |||| || | | ||   |     | | || ||| |         |||||| |||||||||||||| |||||||||||||| || ||| ||     ||| ||||| || || ||| |||| || || || || |||||| | ||  |
------------------------------------------------------------------acaacttgtgttgcatttctcattggcgaattttgtgtatgacttttctatcagtttggtgctccaaacaatgagactttttccctcgtgcctgtaacagGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAATTTGAGTGGCAACCAGATCATCAATTATAGATGCGACCCGTCAGAGAAGTGGCTTGTGCT

upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S147_10V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgttta--tggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatt--tagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                                     | |  |  |||| |    |||   |      |  ||| | |   |  ||||    |||    |||||  |  ||   | ||| |||      ||  |||| |||   | | |   ||  |  ||||||| |||||||||||||| |||||||||||||| || || |||     ||| ||||| ||||||||  |||| || ||  |||| || ||| | || ||
------------------------------------gtacgaacccttttgtttctgactgtcc--gatgtatgagatagcttctgttggattggcgagttttctatcagt---tcttgcattcacacatt--aatgctttctctctttgggtctgtaatagGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAACCTGAGTGGCAACCAGATCATTAACTACAGATGCGACCCCGCTGAGAAATGGCTTGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
                                 ttttgttgtctctctc  CT-rich tract
               atttgtt  TA-rich tract