1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagtttcattttcattaagaatggtaaaaatcagaaatctggggtggtggggaggattaatctgaggtggtgatgaactggtgggatgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACATCTTCGGAGCTTGCTGTGCCACAACTGTCTTCATTCCTTCATTCCACAAC
species | Vitis vinifera |
transcript | Vv13s0067g00330.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAG CAATATATACTACATAAATGATCGACTGGAGATGAGGACATGGACCTACATEST: gi|37189068|gb|CF608417.1|CF608417
genomic: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAGgtcagtttca ... atgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACAT
EST: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAG CAATATATACTACATAAATGATCGACTGGACAAGAGGACATGEST: gi|110402117|gb|EC968752.1|EC968752
genomic: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAGgtcagtttca ... atgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATG
EST: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAG CAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACAT
genomic: TGTACTTTCCTCCTTTTTGGATCCGTCATACAGCTGATTGCTTGTGCAAGgtcagtttca ... atgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACAT
ggggtggtggggaggattaatctgaggtggtgatgaactggtgggatgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACATCTTCGGAGCTTGCTGTGCCACAACTGTCTTCATTCCTTCATTCCACAAC
gattaat putative branch site (score: 3)
attaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttcattttcattaagaatggtaaaaatcagaaatctggggtggtggggaggattaatctgaggtggtgatgaactggtgggatgtttacagCAATATATACTACATAAATGATCGACTGGACAAGAGGACATGGACCTACATCTTCGGAGCTTGCTGTGCCACAACTGTCTTCATTCCTTCATTCCACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT