Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagactgaaaacttgatctgccctcttgcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG

Basic information

species Vitis vinifera
transcript Vv13s0064g01290.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G142932_T02 (Zea mays), 3'ss of exon 5
------------------------------------gta-tagactgaaaacttgatctgccctctt-gcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttg---tcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
                                    | | |||   | | | |   | ||     || ||| || |||   | ||     |    |   || | || | |      |  |    | | |   ||||||||| |||||| | || |||||||||||||| || || |||||||| || || ||||| ||||| |||
gtactcgcctttctgcagccacggcaacaccgataggcagtagctaggacattgtgtgtgtgtggttagcaaattttctgtgtgaggaccactccatcattgacttgtctgcaacctgcgcttccatttcctgcagCAAACCAACACATCTGACATGCTAGATTTGGCTGTCGACTACATCAAGGAACTCCAGAAGCAGGTTAAG

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G36750.1 (Glycine max), 3'ss of exon 5
---gtatagactgaaaacttgatctgccctcttgcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
    | ||  || |    || |   ||       || ||  |   | | |   |  | || |||   |   |   | | |  || ||    |||||||||||||| ||| ||||||||| | ||||||||||| || ||||| |||||||| |||||||| || |||
gtaatctaatctaactctttcactagcaaat---cacattgttgagtaaagcttcttcatgggcactatgatgacttgatgcttttc--tcttggcagCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAACAAGTTAAG

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G16190.1 (Glycine max), 3'ss of exon 5
gta--tagactgaaaacttgatctgccctcttgcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
|||  |  | |  ||| |  || ||           |    | | || | | ||||||||   |  |||| ||               | |||||||||||||| ||||||||||||| ||||||||||||| || || || || ||||| ||| || | || |||
gtaactttatttgaaattccatttgattgaaatttcactcactttgaaagt-tgatgataacttataattcttc--------------ccttggcagCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTATATTAAGGACCTGCAGCAAAAAGTTAAG

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G27460.1 (Glycine max), 3'ss of exon 3
gtatagactgaaaacttgatctgccctcttgcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
   || ||| |     | | ||  |   |  |||   |   |  |   | |     |   ||   ||   ||   | |||| ||    |||||||||||||| ||| ||||||||| | ||||||||||| || ||||| |||||| | |||||||| || |||
--gtaaactaactctctca-ctagcaaatcacattgttgagtaaaacttcttcatgtgcactatgatgacttgatgcttttctc----ttggcagCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAG

upper sequence: Vv13s0064g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G42680.1 (Glycine max), 3'ss of exon 5
gtatagactgaaaacttga--tctgccctcttgcatatcttcatggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
   || | |||| | ||||  | ||   |       |  | ||     ||| |||   | |     || ||      | |  |  |  | |||||||| ||||| ||||||||||||| ||||||||||||| ||  |||| || ||||| ||  |||| ||  ||
--gta-attgaacaattgaaatttgattttcattgaaattccacttgcactttgaaatttgatgataactt------gataattcctcccttggcagCCAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGCACATTAAGGACCTGCAACAACAAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggagactgtgatgataggcttaaatttttttgggtttttgtcgtctttggcagCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAG
                                    tttttgtcgtcttt  CT-rich tract
                     ttaaattttttt  TA-rich tract