Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttatatttcaccatgctggactgatttgctttacaattaagcatatggcaatggtaaccaattgctctttatatatatatatttgtatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTTAGATGGGTGCTGAGGTTTTCTCACAAACTATAGGACAATTTTGTTTTTT

Basic information

species Vitis vinifera
transcript Vv13s0064g00850.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00850.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G027728_T01 (Zea mays), 3'ss of exon 4
gtaagccttatatttcaccatgctggactgatttgctttacaattaagcatatggcaatggtaaccaattgctctttatatatatatatttgtatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTTAGATGGGTGCTGAGGTTTTCTCACAAACTATAGGACAATTTTGTTTTTT----
||||  |||  |      |||  |  |  |        ||||  ||  | | | |||    |  |  |  | |  | ||   | |     |||  |||||||||||||||||||||||||||   |  ||  |||| || | |     |   |  |   ||   | | | ||    ||   | |    |  | |||||        
gtaa--cttgaacactgtcatttttcagag------catacacctagtc-tgttgcatgcattccgcaaggtttataattcttgttatggtgtg-gttgcagGTGATTCTGATATCATCAAGACTACACCGGGTGAGCAGTAAAGAAGCCCCTGCA---GTAGGGGGATCTTACTGCAT-TTGTTCTTCTGTCTTGTTAAACAGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276983|gb|DV940991.1|DV940991
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77588180|gb|DV223301.1|DV223301
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71872071|gb|DT021126.1|DT021126
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110376398|gb|EC941462.1|EC941462
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|37187884|gb|CF607235.1|CF607235
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71867496|gb|DT016551.1|DT016551
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71873230|gb|DT022285.1|DT022285
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110733216|gb|EE109213.1|EE109213
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGATCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|87585575|gb|DY474236.1|DY474236
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110366148|gb|EC929857.1|EC929857
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77579663|gb|DV218684.1|DV218684
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|77577312|gb|DV217370.1|DV217370
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|110378405|gb|EC943536.1|EC943536
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|71866692|gb|DT015747.1|DT015747
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
EST: gi|30137151|gb|CB922489.1|CB922489
EST:     AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAG                         GTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT
genomic: AGCATGTGGCAAGTATTTCCGGGTCTCTTGCCTGAGCATTGTCGATCCAGgtaagcctta ... tatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatggcaatggtaaccaattgctctttatatatatatatttgtatgttgcagGTGATTCTGATATCATCAAGCAAATGCCTAGTGACCACTGAGCTGACTGTTAGATGGGTGCTGAGGTTTTCTCACAAACTATAGGACAATTTTGTTTTTT
           tggtaac  putative branch site (score: 2)
                   aattgctctttatata  TA-rich tract