1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacatggtatgtgtttatatcaaatctcatccattagcttgttatgaaatacatgcataaactattttttgtttttgtttttgacattccctttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
species | Vitis vinifera |
transcript | Vv13s0064g00450.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAT GTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTAEST: gi|110390010|gb|EC954893.1|EC954893
genomic: GAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAGgtatgaattg ... cctttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
EST: GAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAG GTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
genomic: GAAAGGCCGTGTATACAATTTGTCTCCATATATGAAATTTCATCCTGGAGgtatgaattg ... cctttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
tgaaatacatgcataaactattttttgtttttgtttttgacattccctttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
ttttgac putative branch site (score: 3)
cattccctttctc CT-rich tract
ataaactattttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatggtatgtgtttatatcaaatctcatccattagcttgttatgaaatacatgcataaactattttttgtttttgtttttgacattccctttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
ttacatg
- - - -gtatgtg
- - - - - - - - - -atcaaat
- - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - -tagcttg
- - - - - - - - - - - - - - - - - - - - - - - gaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacattc