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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttgtccattagtcctaacctaacccgatttattttatttaattgtttatccattcatacagatcatgggctcaacttgagtatatcttatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTGTGCTATGCAGAAAACCCTGACAACCGGCTGTTTGATAAAACAATACCCG

Basic information

species Vitis vinifera
transcript Vv13s0064g00030.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710529|gb|EE086958.1|EE086958
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCCGTGTGAGCTGCTACTA
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTA
EST: gi|110371335|gb|EC935277.1|EC935277
EST:     GCTTCACCGCCACCCTCTCCCTCTTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
EST: gi|110703724|gb|EE080819.1|EE080819
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
EST: gi|110427245|gb|EC993680.1|EC993680
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
EST: gi|110726873|gb|EE103034.1|EE103034
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
EST: gi|110727745|gb|EE104856.1|EE104856
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
EST: gi|110374456|gb|EC939224.1|EC939224
EST:     GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATG                         GCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG
genomic: GCTTCACCGCCACCCTCTCCCTCCTTGCATTTTTCGTAGGATATCTCATGgtgggttgtc ... tatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatccattcatacagatcatgggctcaacttgagtatatcttatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTGTGCTATGCAGAAAACCCTGACAACCGGCTGTTTGATAAAACAATACCCG
                                          tcttattt  CT-rich tract
                                    agtatatcttattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggttgtccattagtcctaacctaacccgatttattttatttaattgtttatccattcatacagatcatgggctcaacttgagtatatcttatttaccagGCGAGGATTGCCATGGCACTACCACATGCCTGTGTGAGCTGCTACTATGTGTGCTATGCAGAAAACCCTGACAACCGGCTGTTTGATAAAACAATACCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT