Sequence
atgc intronic sequence ATGC exonic sequencegtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggttattttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0047g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G06860.1 (Glycine max), 3'ss of exon 4
gtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggtta--ttttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
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--------------------------gttattcttgtt----gtatttctatgtgctgcttaaatgtttgatgggatacatgtattttatccagATCACCTCCCGTGGCATTGCAGCCTTCATTGGGCCATTACTTTGCACGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACTAACACAGGG
upper sequence: Vv13s0047g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA19G24220.1 (Glycine max), 3'ss of exon 4
gtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggtt--attttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
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-----gtatgtttatttcctattattgttattcttgtt----gtatttctatgtgctgcttaaatgtttgatgggatacatgtattttattcagATCACCTCCTGTGGCATTGCAGCCTTCATTGGGTCGTTACTTTGCGCGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACGAACACGGGG
upper sequence: Vv13s0047g01150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G27325.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggttattttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
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-----gtaagttttctccaaacttaacaagttttactcgcca--aacaacatggtttgggt---ttttatg----tatctaatttcatccagATCACCTCCTCTGGCATTGCAGCCATCCTTGGGGCATTACTTTGCTCAAGTGAATCGAGAATGGAAAAAAGGTTATGAAGTTCAAACATCCCCTGGGGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccagaaatattatggattggttattttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
tttccctgttttttcc CT-rich tract
aaatattatggattgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggttattttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA