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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATAGAATCAACTGGGGCCCAAGTCCTTGAACAAATACTAAGGATTATGCTTC

Basic information

species Vitis vinifera
transcript Vv13s0019g05380.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G18400.1 (Glycine max), 3'ss of exon 4
gtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATAGAATCAACTGGGGCCCAAGTCCTTGAACAAATACTAAGGATTATGCTTC
      || | |   | |||| ||||| | ||    | ||| |||   ||  ||   |     | || |   ||   |   | ||  |  |||||  ||||| |  ||||| || |||||||| || | ||| || ||     ||||||| |||||| ||||| | |||||||||||||||||||| |||||||||||||
------gtagtactct-atttctatttcatttt---cttatgattctatatttgtgggattccagttaaaggtgccattggattgccatgtggaatccagGTAAGCATTGAAATACCTTTTCCTTTCCAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAGGATTATGCTTC

upper sequence: Vv13s0019g05380.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G24290.1 (Glycine max), 3'ss of exon 4
gtagtggtggcaaattgatttgtattttaattgtggcatatcatttggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATAGAATCAACTGGGGCCCAAGTCCTTGAACAAATACTAAGGATTATGCTTC
      || | |   | |||| ||||| | ||    | | | |||   ||  ||   |     | || |   |||  |   | || ||  |||||  ||||| |  ||||| ||||||||||| || | ||| || ||     ||||||| |||||| ||||| | |||||||||||||||||||| |||||||||||||
------gtagtactct-atttctatttcatttt---cttgtgattctatatttgtgggattccagttaaaggtgtcattggattgctatgtggaatccagGTAAGCATTGAAATTCCTTTTCCTTTCCAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAGGATTATGCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351022786|gb|FQ428695.1|FQ428695
EST:     ATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAG                         GTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATA
genomic: ATCAGAGCAACTCGTTGGTGCAGCAACTCACTTCAGACACTGTCATTGAGgtagtggtgg ... tggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaaatggttgtaaatatttcagattgttttgctaatgttacctggaagtcagGTTATTATTGATATTCCTTTTCCATTTCGAGCGATTCCTGTCGAAGCAATAGAATCAACTGGGGCCCAAGTCCTTGAACAAATACTAAGGATTATGCTTC
                                tgctaat  putative branch site (score: 2)
             taaatatttcagatt  TA-rich tract