Sequence
atgc intronic sequence ATGC exonic sequencegtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G34160.1 (Glycine max), 3'ss of exon 2
gtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
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gtgcgttacc-ctatcacattttcac--tttcatt-atttctatgactttctc-atgtcgtaacaaag--atatgtttgcagGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGC
upper sequence: Vv13s0019g05260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G33370.1 (Glycine max), 3'ss of exon 2
gtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
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gtgcgtta-ctctatcacattttcactttcatttttcattatttgtatgacttcctcatgtggaaacaaagatatgttgcagGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGC
upper sequence: Vv13s0019g05260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G34170.1 (Glycine max), 3'ss of exon 3
gtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
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gtgtgttatc-ctctcacattttcactctcatttttcattatctgtgtgaatttcccatgtga--aaacaatatgttgc-agGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGATAGCAGCAGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTTGCAGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
ttctaac putative branch site (score: 1)
cgtttcc putative PPT
atttgattatctttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgctatctctctctgaaccccatgttttgattcactcatttgattatctttatcttctaacagagtagaacgtttccagGGTTGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT