1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatactaaactgttgagcttcactgcatggcacctattatcaggtgaaaacgttttaacttttgattgacctattcccatacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCAGAAGCATATGGTGACAGTGGTGCATCCTCTTCAAAGAAAAATCCCGAGG
species | Vitis vinifera |
transcript | Vv13s0019g05240.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCAEST: gi|110724243|gb|EE099899.1|EE099899
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCAEST: gi|110700080|gb|EE077708.1|EE077708
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCAEST: gi|110363943|gb|EC927578.1|EC927578
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: GACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCAEST: gi|34550565|gb|CF518783.1|CF518783
genomic: GACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCAEST: gi|110366982|gb|EC930902.1|EC930902
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
EST: TGATGGGAAGTGAAAACCCTCTTTCTGACCTTGCACCACTTGATCAAGAG CCTGTGAATGGAGGAGCTGAGAAAGTGCCTATTGGGAGTCAGCAGCTCTCA
genomic: TGATGGGAAGTGAAAACCCTCTGTCTGACCTTGCACCACTTGATCAAGAGgtaatactaa ... catacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCA
cctattatcaggtgaaaacgttttaacttttgattgacctattcccatacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCAGAAGCATATGGTGACAGTGGTGCATCCTCTTCAAAGAAAAATCCCGAGG
cctattccc CT-rich tract
ttttaacttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactaaactgttgagcttcactgcatggcacctattatcaggtgaaaacgttttaacttttgattgacctattcccatacaacagCCTGTGAATGGAGGAGCTGAGAAACTGCCTATTGGGAGTCAGCAGCTCTCAGAAGCATATGGTGACAGTGGTGCATCCTCTTCAAAGAAAAATCCCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA