Sequence
atgc intronic sequence ATGC exonic sequence...gcttgtgcacggtgatgaggacctttttttctgactaatgctgtatctctttctctctgctgttttctttttcctttttctctttttcattcatttgcagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G03230.1 (Glycine max), 3'ss of exon 4
gcttgtgca-cggtgatgaggacctttttttctgactaatgctgtatctctttctctctgctgttttctttttcctttttctctttttcattcatttgcagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
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-ttcatttagccttgatgtggaatttagttatatttcttctctctttttttttttttgagttggtccttatttagtgattttctctccattttgttggcagTGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCTTATACAGGAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G42140.1 (Glycine max), 3'ss of exon 1
----gcttgtgca-cggtgatgaggacctttttttctgactaatgctgtatctctttctctctgctgttttctttttcctttttctctttttcattcatttgcagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
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acattttcatttagccttgatgtggaatttagttat--atttcttctctgttttttttagttggtcctcatttagtgattttctctccattt---ttgttggcagTGTAATTATGTTTTTGTCAGACATGTCTGGAAGGACACCCCTATACAGGAA
upper sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 4
gcttgtgcacggtgatgaggacctttttttctgactaatgctgtatctctttctctctgctgttttctttttcctttttctctttttcattcatttg-cagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
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-------------------gtaatttatcttcgattt-tcctttgacttccaaaatgtgacatttgttcctctcatataatgtttgattctgtttcatcagTGTCATCATGTTCTTGTCAGACATGTCTGGGAAATCACCCTTGTACAAGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctttctctctgctgttttctttttcctttttctctttttcattcatttgcagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
ctctctgctgttttct CT-rich tract
tttttcattcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttgtgcacggtgatgaggacctttttttctgactaatgctgtatctctttctctctgctgttttctttttcctttttctctttttcattcatttgcagTGTTATCATGTTCTTGTCTGACATGTCTGGAAGGACGCCCTTATACAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
-cttgtgc
- - - - - ggtgatg
- - - - - - - - - - - - - - ttctgac