Sequence
atgc intronic sequence ATGC exonic sequencegtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G123537_T01 (Zea mays), 3'ss of exon 4
gtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
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gtat---tatttccttgaaattctaacgtagtcaagttcatttattttggtatgaatctactatggttctctctcttaccttt----cagTTCGGATCAGTATGGGAGTCGCTTTATACAGCAGAAACTAGAAACTGCTTCTACTGAACAGAAGAATATGATTTTTCCTGAGATCCTTCCCCAGGCACGT
upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G32230.1 (Glycine max), 3'ss of exon 6
gtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
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----gtat-caatcttgcacctccaatgtttttt-ctagtgatatg-gttctggagatctga-attgataatctgtg--ccataatgcagTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACAGCATCAGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGT
upper sequence: Vv13s0019g04640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G35290.1 (Glycine max), 3'ss of exon 6
gtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
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----gtat-cgatcttgcatctccgatgttttttcctagtga--tatggctctggggatctgaattgataatctgtg--ccataatgcagTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
tcttaat putative branch site (score: 3)
tctcctattctt CT-rich tract
tattcttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcatataatcctgtcttagtgctgtattctacttatgaagcacaagcttgagttctaagagttttaatctcctattcttaatacagTACTGATCAATATGGGAGCCGCTTTATTCAGCAGAAACTAGAAACTGCCACAGTGGATGAAAAGATTAAGATATTCCCTGAGATTATTCCTCATTCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA