Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcatattttagtttggaagttcccaaaaatggcctatggaatgtataaaatatttattgataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G21570.1 (Glycine max), 3'ss of exon 1
----------------gtaagttcatattttagtttggaagttcccaaaaatggcctatggaat----gtataaaatatttatt----gataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
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gtgagttctaattcttgctatatggtctgttactctgtttatgcgtacagttattacttgcattctttgtctagaagattagttgacagataaatttctgcagATATCTTTATCAACTGCCTCCATTGCAGCCAAATCATACCTGTGGAGGAGCAAATATTTGGGCTGATGTTAGTAGCAGTAGTGAGATGTTTTGTTCAGCA
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 4
gtaagttcatattttagtttggaagtt-----------cccaaaaatg--gcctatggaatgt-ataaaat--atttattgataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
|| ||||| ||| | || || || | || |||| ||| || |||| || | ||| | |||| ||||| |||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| | || || ||| |
gtgagttctaattctggtccaatgatttgttaattttcccttgagttgttgcctgcatgctgttatgaaattaatggacaaatatatgtctgtagATATCTTTATCAGCTGCCTCCAATGCAGCCAAACCATACCTGTGGTGGAGCAAATGTTTGGGCTGATGTTAGTAGCAGTAGTGAGATATTTTGCTCAGCT
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G35310.2 (Glycine max), 3'ss of exon 4
gtaagttcatattttagt-----------ttggaagttcccaaaaatg--gcctatggaatgt-ataaaat--atttattgataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
|| ||||| ||| | | || | |||| | || |||| ||| | |||| || | ||| |||||||||||| |||||||| || ||||| ||| |||||||||||||||||||||||||| ||||||| || ||| |||| ||| ||||| | || || ||| |
gtgagttctaattctggcccaatgatctgttagtttttccttgagttgttgcctgcatggtgttgtgaaattaatggacaaatatatttctgcagATATCTTTATCAGCTGCCTCCAATGCAGACAAACCATACCTGTGGTGGAGCAAATGTTTGGGCCGACGTTAGTAGCAGTAGTGAGATATTTTGCTCAGCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcccaaaaatggcctatggaatgtataaaatatttattgataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
tattgat putative branch site (score: 3)
tttctgc putative PPT
tatggaatgtataaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcatattttagtttggaagttcccaaaaatggcctatggaatgtataaaatatttattgataggtttctgcagATACCTTTATCAACTACCTCCTGGACAGCCAAACCATACCTGTGGTGGAGCAAATATTTGGGCTGATGTTGGTAGTAGTGGTGAGGTTTTCTGTTCAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT