1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcttttcttcatcctttttttttttaattgtggctgctttttactgtgggatttcagtttgttatccactttgcttatgctatatcttttattgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGGATGAAGCTATTGCAATTTCCAAGGCAAGTATA
species | Vitis vinifera |
transcript | Vv13s0019g04590.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|352790386|gb|FQ478026.1|FQ478026
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|349820813|gb|FQ404198.1|FQ404198
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|349812310|gb|FQ406331.1|FQ406331
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|161720443|gb|FC070210.1|FC070210
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGTTCTGEST: gi|349817149|gb|FQ405154.1|FQ405154
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAAGAGAGCTATTGGACACACCCCCTCCEST: gi|349827879|gb|FQ422747.1|FQ422747
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCC
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|351025874|gb|FQ427886.1|FQ427886
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGEST: gi|351029701|gb|FQ427541.1|FQ427541
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
EST: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAG TTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
genomic: GTGTCAAAGATTTCATGGATGGCATGGGCCTTGGAATGCTTGTTGAACAGgtaaagcttt ... attgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTG
gtgggatttcagtttgttatccactttgcttatgctatatcttttattgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGGATGAAGCTATTGCAATTTCCAAGGCAAGTATA
tattgac putative branch site (score: 2)
tcttttatt CT-rich tract
tatatcttttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttcttcatcctttttttttttaattgtggctgctttttactgtgggatttcagtttgttatccactttgcttatgctatatcttttattgacaaagTTAGGAGAGTTAAAACTAGGAGAGCTATTGGACACACCGCCTCCTGGTCTGGATGAAGCTATTGCAATTTCCAAGGCAAGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - tcatcct
- - - - - - - - - - - - - - - tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc