1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttatttattgatcagtagcaaagagaatatattgaagatttaaagaactgtacaccaaggtacacaggtcgagctaatgtgttcttttatttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG
species | Vitis vinifera |
transcript | Vv13s0019g03870.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAG CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAAEST: gi|110375503|gb|EC940493.1|EC940493
genomic: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttatatgtg ... tttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAA
EST: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAG CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAAEST: gi|161707924|gb|FC055680.1|FC055680
genomic: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttatatgtg ... tttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAA
EST: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAG CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAAEST: gi|161706499|gb|FC055020.1|FC055020
genomic: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttatatgtg ... tttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAA
EST: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAG CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGEST: gi|161716608|gb|FC065554.1|FC065554
genomic: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttatatgtg ... tttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTG
EST: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAG CCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAA
genomic: AAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttatatgtg ... tttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAA
gaactgtacaccaaggtacacaggtcgagctaatgtgttcttttatttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG
agctaat putative branch site (score: 3)
ttcttttatttgtt putative PPT
ttcttttatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatttattgatcagtagcaaagagaatatattgaagatttaaagaactgtacaccaaggtacacaggtcgagctaatgtgttcttttatttgttacagCCATGGCTTGCGAACTGGAATTTTTGAAGCAAGCAAGCTTGTGTTGATAAATGTTGCTCCTACCCTTCCAGAGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - -aagagaa
- - - - - - - - - - - - - - - - - - - - -taaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - acaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg