Sequence
atgc intronic sequence ATGC exonic sequence...agtttacttactgatattgtttggtttcagaaccagtatagccgtaaacaggtcaatatggttatatatcggtcaatcatttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G42130.1 (Glycine max), 3'ss of exon 3
agtttacttactgatattgtttggtttcagaaccagtatagccgtaaacaggtcaata-tggttatatatcggtcaatca-tttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT
|||| ||| | | | || ||| | ||| || | || | | || | |||| | | | | | ||| ||| ||| | ||||||| |||||||| || ||||| ||||||||||| || ||||||| || ||||||||||||||| ||||| | ||||| ||||||||| ||||||| |
agttc-cttgtaaacaattttgcaattctttagtgctattgctctct-cactttattagttgttagttcttcattgttaaatttctctgcactacttaccagCCAGCTTCACCAACTACTTTGGGAAAGGAAATGGCGATCTTTGCTGCAAGATTAAGCAGAGAAAGGAAGGATCTGTCTCAGGTTGAGATAGTGGGGAAAT
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G06780.1 (Glycine max), 3'ss of exon 3
agtttacttactgatattgtttggtttcagaaccagtatagccgtaaacaggtcaatatggttatatatcggtcaatc--atttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT
| || | ||| || ||||||| | | || | | || | | | || | || | | | |||||||| ||| | ||||||| |||||||| || ||||| ||||||||||| || ||||||| || ||||||||||||||| | ||| | ||||| ||||||||| ||||||| |
aattca-ttagtgttattgttcttccactttattggtttttagttcttcatctttaaacagtcgtg-attgacctttgcaatttttctgcactacttaccagCCAGCTTCACCAACTACTTTGGGAAAGGAAATGGCGATCTTTGCTGCAAGATTAAGCAGAGAAAGGAAAGATCTGTCTCAGGTTGAGATATTGGGGAAAT
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G28590.1 (Glycine max), 3'ss of exon 5
agtttacttactgatattgtttggtttcagaaccagt-atagccgtaaacaggtcaatatggttatatatcggtcaatcatttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT----
| ||| ||||||| | | | ||| | | | | || | || || | | ||||| || ||| ||| ||||||| ||| |||| ||| |||| || |||||||| || ||||||| || ||||||||||||||| |||| | ||||| || |||||| ||||||| |
----tcattagcattattgttctttcacttcattagttgttattcttctttgttaaacagtcttg-attgaactttgtaattttcctgcactattcaccagccagCTTCATCAACTACCCTGGGAAAAGAAATGGCGATATTTGCTGCAAGATTAAGCAGAGAAAGGAAGGAACTGTCTCAGGTCGAGATATTGGGGAAATTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacaggtcaatatggttatatatcggtcaatcatttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT
tttttctttactgttc CT-rich tract
aatatggttatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttacttactgatattgtttggtttcagaaccagtatagccgtaaacaggtcaatatggttatatatcggtcaatcatttttctttactgttctgtagCCAGCCTCACCAACAACCTTGGGGAAGGAAATGGCAATTTTTGCTGTCAGGTTAAGCAGAGAAAGGCAGGATATTTCTCAAGTTGAGATAATGGGGAAGT
- - - cttactg
- - - - - - - - -tgtttgg
- - - - - - - - - - - - - - agaacca
- - - - - - - - - - - - - - - - - - - - - - -aaacagg