Sequence
atgc intronic sequence ATGC exonic sequencegtaccctccaagtctataaagacatgatgataatagtttagactgctatttacaaaataatttcttcaaatgttttccagGGTGTTGATGCATGAACTTTGTACTTTGGACTTAACTTTCTTGACCTACAAACAGAAGCTAGCATTCTGGATCAACATTTACAATGCCAGCATAATGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G41560.1 (Glycine max), 3'ss of exon 4
----------------------------------gtaccctccaagtctataaagacatgatgataatagtttagactgctatttacaaaataatttctt------caaatgttttcc---agGGTGTTGATGCATGAACTTTGTACTTTGGACTTAACTTTCTTGACCTACAAACAGAAGCTAGCATTCTGGATCAACATTTACAATGCCAGCATAATGCAT
|| | | | || ||||| || |||| | || | ||||| || ||||| || | | | ||||| || |||||| | || ||| | | || |||| ||||||||||||||| |||||| | ||||||||||||||||| ||||||||| |||||||| ||
gttttcactaacctaccaagtacatagtttaccaataactatttaaacaatgtctacatgttg-taatgttatactatcttattttacctatttcttcttactatctaattcctctttaatagggttttaatgcataagCTATGTGATGTAGATTTAAGTTTCTTGACCTACAAGCAGAAGTTCGCATTCTGGATCAACATCTACAATGCCTGCATAATGAAT
upper sequence: Vv13s0019g01510.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G07390.1 (Glycine max), 3'ss of exon 4
------------gtaccctccaagtctataaagacatgatg-----ataatagtttagactg-----ctatttacaaaataatttcttcaaatgttttccagGGTGTTGATGCATGAACTTTGTACTTTGGACTTAACTTTCTTGACCTACAAACAGAAGCTAGCATTCTGGATCAACATTTACAATGCCAGCATAATGCAT
| | | | | |||| | |||| | | ||||| || || |||| | | | |||| ||| | |||| ||||||||||||||| | || ||| | | || |||| ||||||||| ||||| |||||| | ||||||||||||||||| ||||||||| |||||||| ||
gactttcacttcgcaacaccaataactatttaaacattgtctacatgttatagtataacatgttatactatcttttagctcattttttcc--tcttttatagGGTGTTGATGCATAAGCTATGTGATGTTGATTTAAGTTTCTTGACATACAAGCAGAAGTTGGCATTCTGGATCAACATCTACAATGCCTGCATAATGAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgataatagtttagactgctatttacaaaataatttcttcaaatgttttccagGGTGTTGATGCATGAACTTTGTACTTTGGACTTAACTTTCTTGACCTACAAACAGAAGCTAGCATTCTGGATCAACATTTACAATGCCAGCATAATGCAT
tgttttcc CT-rich tract
tatttacaaaataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaccctccaagtctataaagacatgatgataatagtttagactgctatttacaaaataatttcttcaaatgttttccagGGTGTTGATGCATGAACTTTGTACTTTGGACTTAACTTTCTTGACCTACAAACAGAAGCTAGCATTCTGGATCAACATTTACAATGCCAGCATAATGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC