Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG

Basic information

species Vitis vinifera
transcript Vv13s0019g00530.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 2
---------tattttagctgcatactagtgtattacaggctagattt--cctttgccaacaatatatgtggtttcatttgatg----acctttgatgatggtccaaaaat----tgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
         |   || ||| || | |  ||| |   |   ||||| |  | ||    |    || |||  |||| |||  ||     |  ||   |     |||          |||| ||||| |  |||||  |||| || ||||||||||||||||||||  | || || | ||| |||||||||||||| || ||||| ||||| ||||||    
gtacgtccgttccttcgctacacattcttgtttctaactatagatctagcattgagtatttgtacatgcagtttgattctatattataatttaactagctttccctgtccattgtGCAATTTGGTTTTATTGTCTTGACCACCTCGGCTGGCATCATGGATCACAAAGAAGCCACGAGGAAGAATGTTGGTGGAAATGTGCTAGGTTTTTTCTAC----

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G328578_T01 (Zea mays), 3'ss of exon 3
--tattttagctgcatactagtgtatta-caggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
  || |  |      |     | ||  | | |  |||| ||   |   ||| |  | |    ||   |  ||     ||||||   ||||        || ||||||| ||||| || || || ||||| ||||| || ||||| ||||||||||||||  | ||||||||||||| ||| |  || |||||||| ||||   
gttagtccaatccgctgtctctataaaagctgattagagttgtctgtacaatatgaaac-cagtgctaactgtgcctctttgac--tggtg-------tgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCTAGCCGTAAGAATGTTGGTGCCAAGGCTCTAGGTTTCTTTTACTGAA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G018228_T02 (Zea mays), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
    ||||   ||  ||  ||| |      | | || |  || |       | | |    ||| |    |   |      ||    |   |    || ||||||| ||||| || || || ||||| ||||| || ||||| |||||||||||  |  | ||||||||||||||||| || || |||||||| || |   
---gttagtc-caggctgctgtctct---acaaaatctgattaga-gtttgtctgtacactttgaccccagtgctaactgtgcctctttgactggtgtagTTTGGCTACATCGTCCTAACAACTTCTGCTGGAATTATGGACCATGAGGAGGCCCGCCGTAAGAATGTTGGTGGCAAGGTTCTAGGTTTCTTTTATTGAA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttccttt-----gccaacaatatatgtgg-------tttcatttgatgacctttgatgatggt--------------ccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
   ||   | ||| |||| |  |  || || |  |||   ||      ||  ||||  |   |||       |||   ||||| |   ||| |  |  |              |       ||||||| |||||||| || || || |||||||| ||||||||||| || ||||||||  |  | ||||  || || ||||| || || ||||||||||| |   
--gttagtccgcagactactacaacactggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G00590.1 (Glycine max), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttga----tgatggtccaaaa-attgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
||   || |||      |   |  |   | |     |||  |||      ||  || |||||||   || |  ||  | |    || | |  |||||   |||||||||| || |||||  |||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||
taacctatctgtgattaaactttatgttgtccgttattctcttgt-----atgcatatggtttctcctgtttgcccctaaactttggttgctcaaaatgatgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 3
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttga----tgatggtccaaaa-attgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
    | | ||   |   | |  | |  | | |    ||  | |       ||  || |||||||   || |  ||  | |    || | |  |||||   |||||||||| || |||||  |||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||
---ctaacctatctgtgattaaactttatgttgccgttattctcttgt--atgcatatggtttctcctgtttgcccctaaactttggttgctcaaaatgatgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 3
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttga----tgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
    | | ||   |   | |  | |  | | |     |  ||  |         || |||||||   || |  ||  | |    |||| |  |||||   ||||||||| || |||||  |||| || || ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||
---ctaacctatctgtgattaaactttatgttgtccgttattctcttgtg-cgcatatggtttctcctgtttgcccctaaactttgattgctcaaaatgcgcagTTTGGTTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 3
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtc---caaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
   || |||||  | |  || |  || |   |  | |     |     |  | ||    |||||  ||| ||||| |      || |    ||||  ||||||||||| || |||||| ||||||| || |||||||||||||||||||| || |||||||||||||||||||                              
--attaagctg-gtgcctgtatcctaaattttttaatcatggtataggctttgtacacagtttccattgttgaccctaacctttgtttacacaaatgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAGAATGTTG------------------------------

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 3
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatg-tggtttcatttga----tgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
 |  ||| |  |||   | | || |    | |   | |  | ||   |  | | ||| |   | || ||      |  | ||||||  |  | | ||  ||||||||||| || |||||  ||||||| || || |||||||||||||| || || ||||||||||| ||||||||||| || || || ||||||||||||||| 
-agattaac--cattgaactatactgattggttactctgttatgttgaatacaaatggttcctccacttatcccttaccttttgat--ttatactaattttgcagTTTGGGTATATTGTATTGACTACCTCTGCCGGCATCATGGATCACGAAGAAGCTAGGAGAAAAAATGTTGGTGGTAAGGTACTGGGTTTCTTCTACTAGA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 3
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttg-atgatggtcca----aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
 |  ||| |  |||   | | ||||    | |   | |  | ||   |  ||| |  ||||| |      |  || ||  ||  || |  |    ||   |||||||||| || |||||  ||||||| || |||||||||||||||||||| ||||||||||| || ||||||||||| || ||  | || |||||||||||| 
-agattaac--cattgaactatattgatagtttactctgttatgttga--atacaaatggttcctccacctatcccttacattttgatttatggtaattatgcagTTTGGGTATATTGTATTGACTACCTCTGCTGGCATCATGGATCATGAAGAGGCTAGGAGGAAAAATGTTGGTGGTAAGGTATTGGGCTTCTTCTACTAGT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttcctttgccaac----aatatat-gtggtt--tcatttgatgacctttgatgatggt-------ccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
    | |    |  || | | | |||     || || ||     ||||       | ||| ||| ||  |||||    ||  ||  |  |  ||       |||||    ||||||||| |||||||| ||||| || || ||||| |||||||| ||||| ||||||||||  || |||||||| ||||||||||||||||| ||||||||| 
---gtaaaaaactaaccattcttttatttaataaatctctgagaccaattcatggtttattgtgtttgatcattgtgggatattctaacaaagtatgtgtaccaaattgagcagTTTGGGTACATTGTCCTGACAACATCAGCTGGAATCATGGACCATGAAGAGGCTAGGAAGAAAAATGTTGGGGGCAAAGTGCTTGGTTTTTTCTACTAG-

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S115_101V6.1 (Physcomitrella patens), 3'ss of exon 2
---tattttagctgcatactagtgtattacaggctag--atttcctttg-ccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
   ||  ||  | | |   | | | ||| |    |    ||| |||||| |    |   ||| ||||| ||||      |   ||||| | ||       ||| ||||||||||||||||  |||| || || ||||| || ||||| || || ||||| ||||||||||| || || || || || ||||||||||| ||||   
acttaagttgacagtagtgtggggaatttcgtagtgagtattgcctttgactcttagggtatttggttccatt------ctgctgatgctcgtttcttgtttgtagTTTGGATACATTGTTTTGACAACATCTGCTGGAATTATGGACCACGACGAGGCCAGGAGAAAGAACGTAGGAGGAAAGGTTCTTGGTTTCTTTTACTGAT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S41_94V6.2 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------------------------------------------------tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
                                                                                        | |    | ||| |   |   || |||        ||| ||| |   | | |   ||   | |   ||  | |  | | ||  |  |        ||||||| |||||||||||  |||| ||||||||||| ||||||||||| || || |||||||| || ||||| || ||||| ||  | || ||||| |||||| 
gttattatttaccacctgtcatcgtggtctactcaatattattcaaaatcggtggtacaatgtggtgctgtggagatagcttaacgcatgtgacggttgcgt--catcctagtacttctctttttttcttcgtttagagtcggtggaatcttcattccttatatgt-attttatttttgcctgtgcagTTCGGATACATTGTTTTGACCACTTCGGCTGGAATCATGGATCACGACGAAGCTAGGAGGAAAAATGTCGGAGGCAAGGTTTTGGGATTCTTTTACTAGT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S1_304V6.1 (Physcomitrella patens), 3'ss of exon 2
--------tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
            |||        | || | ||| || | ||    | ||||         |  ||   | | ||| | |||  |||  | ||  |       ||||||||||||||||||||  |||| || || |||||||||||||| || || |||||||| || ||||||||||| || || || ||||||||||| ||||  |
aacgatcaagcgttaatcctcctcaagaggatttcatgttaccgctgcttttaggtatgaacctgaaatctgatt-gttgagtttt--tcatctttt-----ttgcagTTTGGATACATTGTTTTGACCACCTCAGCTGGCATCATGGACCACGACGAGGCTAGAAGGAAGAATGTTGGAGGAAAGGTCCTTGGTTTCTTTTACTGAG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ14550 (Selaginella moellendorffii), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatata-tgtggtttcatttgatgacc-tttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
                             | | |||||     | | |    ||    ||||   |     | ||  |||  |  | |  |      | |||||||| |||||||||||||| || ||| | || ||||||||||| || || || ||||| ||||||||||||||||| || || || |||||||| |   
-----------------------------gtttgattttgagagacgaatcgatggcttggtgcaaagaagtaacgattttctcttcgatctctggct-cagTTTGGTTACATTGTGCTGACAACATCGTCCGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 2
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctt-tgatgatgg-tccaaaaattg---cagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
                                 | ||   ||||  |     ||   ||| ||  |   | || ||   |||  |   | | |    ||   |||||||| |||||||||||||| || ||| |||| ||||||||||| || || || ||||| ||||||||||||||||| || || || |||||||| |   
---------------------------------gtttgattttgagagacgaatcgatggcttggtgcaaagaactaacgattttctcttcgatctctggctcagTTTGGCTACATTGTGCTGACAACATCGTCTGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189257|gb|CF608606.1|CF608606
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|37188644|gb|CF607993.1|CF607993
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110413213|gb|EC978992.1|EC978992
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110706416|gb|EE081925.1|EE081925
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|34320890|gb|CF373644.1|CF373644
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|71889263|gb|DT038318.1|DT038318
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110700432|gb|EE078468.1|EE078468
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|77583362|gb|DV220714.1|DV220714
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|71867515|gb|DT016570.1|DT016570
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110382367|gb|EC939287.1|EC939287
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|27584268|gb|CB006963.1|CB006963
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|32245695|gb|CD711514.1|CD711514
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110397390|gb|EC963125.1|EC963125
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110414287|gb|EC980114.1|EC980114
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110716930|gb|EE092340.1|EE092340
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110697335|gb|EE074231.1|EE074231
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110694545|gb|EE071755.1|EE071755
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|71867475|gb|DT016530.1|DT016530
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110422143|gb|EC988456.1|EC988456
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110396918|gb|EC962625.1|EC962625
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110407526|gb|EC973128.1|EC973128
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110700964|gb|EE078077.1|EE078077
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110702677|gb|EE078855.1|EE078855
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110410562|gb|EC976248.1|EC976248
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110688679|gb|EE067503.1|EE067503
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|351024589|gb|FQ433004.1|FQ433004
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110707337|gb|EE083651.1|EE083651
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110377409|gb|EC942471.1|EC942471
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110715666|gb|EE093979.1|EE093979
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110391160|gb|EC956117.1|EC956117
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|71873421|gb|DT022476.1|DT022476
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110696211|gb|EE075108.1|EE075108
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|32246291|gb|CD712110.1|CD712110
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|34415895|gb|CF414649.1|CF414649
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|51050419|gb|CO818541.1|CO818541
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|71870073|gb|DT019128.1|DT019128
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|30138003|gb|CB923341.1|CB923341
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110374713|gb|EC939636.1|EC939636
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|27585355|gb|CB008050.1|CB008050
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|351013204|gb|FQ424909.1|FQ424909
EST:     CAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: CAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|110724530|gb|EE100438.1|EE100438
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
EST: gi|87585766|gb|DY474350.1|DY474350
EST:     GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAG                         TTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG
genomic: GTGTCAAAGATATTGAGCCATGGACTGCTAGGCTGCTCCCCTCAAGACAGgttagcatga ... aaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG
                             ctttgat  putative branch site (score: 5)
                                            aaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tattttagctgcatactagtgtattacaggctagatttcctttgccaacaatatatgtggtttcatttgatgacctttgatgatggtccaaaaattgcagTTTGGATACATTGTGCTGACTACTTCGGCTGGCATCATGGATCATGAGGAGGCTAGGAGAAAGAATGTTGGTGGCAAAGTGCTTGGTTTCTTCTACTAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - gcatact
- - - - - - - - - - - - - caggcta
- - - - - - - - - - - - - - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggt