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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggctgatctaattcaattattagtgtaagaaggaacctttttcatagatgaattttactttaattcatttgtgaacaatgaactaatggttatcaatctgtcatataaataatgtgtcctttcccagGAAGCTGAATTTGATTTGACCAGAGAGCAAGAGCAATGGGTAATTGGCATTATGCTCTCAGTGACATTGACAAAACTCATTCTTGCTGTCTATTGCCGCG

Basic information

species Vitis vinifera
transcript Vv13s0019g00020.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712799|gb|EE088171.1|EE088171
EST:     CTCTGGGACTGCAGATAGTCTTGGAGTCAGTACGAACACTATCATCTGAC                         GAAGCTGAATTTGATTTGNAC-ANA-AGCA-GAACAATGGGTAGTTGGCAN
genomic: CTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGACgtaagtggct ... cctttcccagGAAGCTGAATTTGATTTG-ACCAGAGAGCAAGAGCAATGGGTAATTGGCAT
EST: gi|110711822|gb|EE088743.1|EE088743
EST:     CTCTGGGACTGCAGATAATCTTGGAGTCAGTACGAACACTATCATCTGAC                         GAAGCTGAATTTGATTTGACCAGAGAGCAAGAAGCA-TGGGTAGTTGGCAT
genomic: CTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGACgtaagtggct ... cctttcccagGAAGCTGAATTTGATTTGACCAGAGAGCAAGA-GCAATGGGTAATTGGCAT
EST: gi|110732363|gb|EE107582.1|EE107582
EST:     CTCTGGGACTGCAGATAATCTTGGAGTCAGTACGAACACTATCATCTGAC                         GAAGCTGAATTTGATTTGACCAGAGAGCAAGAGCAATGGGTAGTTGGCATT
genomic: CTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGACgtaagtggct ... cctttcccagGAAGCTGAATTTGATTTGACCAGAGAGCAAGAGCAATGGGTAATTGGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacaatgaactaatggttatcaatctgtcatataaataatgtgtcctttcccagGAAGCTGAATTTGATTTGACCAGAGAGCAAGAGCAATGGGTAATTGGCATTATGCTCTCAGTGACATTGACAAAACTCATTCTTGCTGTCTATTGCCGCG
        aactaat  putative branch site (score: 2)
                                          tgtcctttccc  putative PPT
                          tgtcatataaataat  TA-rich tract